Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01825 ATGGCAAAGGGTGACACAAGCAACACTTACGAAGATGCTAGAAAACAAAGACTTGAAGAAAACAAAAAGAGGTTTGAGGATTTGGGAATTTCAAGGATTTCAAAAAATTTGACTGAGATCACAAGTTCTGCTAAGAAGACACGGCATCATGTTCCTAAACTGAAACCAAAGAAGACAAATGGTGAAGTGGAACCTAGGCGATCTTCTCGTCTGCGAAACCCAGTTCCTTCATACCGGGAAGATGTGAGCATACACCTTCCAGCTTTGCGGAAGAGGTCAAGATCAAATTCTTCAACATGGGGAAGTTACATTGCGAGACCTTTAGATGAAATCAAAGAAGCTACAGAAGAGGAAAGACTTTGTGCTCTAGAGGCTGCGGAGGCACTCCAAATCAATTTGAACTCTTCAAATCCCTCATTTATCAAGTCAATGGTTCGGTCTCACGTTTATAGCTGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACATCTTCCAAAAACTGTATATGACATGGTTTTAGAAGATGAAAATGGCGCAGAATACGAGGCTGTTTATATTGGCAAGAGAACTGGACTTAGCGGTGGCTGGAGAGCATTTGCACTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGATTGAAGCTTCGAGATTTAAGATTTATGTTGTTAGAGCATTTCCAAATTTAGTTGAAGAAGGAAATATGCATGCAACCAAAGTACCGAAAGCTAGATGTAATATTGAGTCAGAATCCAAGAGTAAAAGGCAAAGAGCGGCTGCTGCATATGAAACTAATGAATCAGAGAGCTCTCAGGAGCATATTGACAAAGAAGTCAAACCACAGGGTGTAAATCCATCTGAGCAAACTAAATTCTCTAAGAGAAAAGCACAAAAGAAATCTATGCTTCTGGCTACTGTGGATTCAAAAGGGAAAGTGCAAATGAAAACTGAGAAACCAAAGGTTTCTCTAGAGCTGTCAAACAAGACAAGAAAGTCAAAGGGAATCAATGAAATTGATGACCCAGGTGAGTTAGAGAAGAAAAGTTTGGTTCACGATGCTGATAGAAAGTTAGAAAAAGTTGAAGCAAGCAAATGTGTGCTAAAGAAAGCTAGAAAAAAACCAGCTCCAAAATTTTTCAGAAAGAAAGCATAA 1167 0.3925 MAKGDTSNTYEDARKQRLEENKKRFEDLGISRISKNLTEITSSAKKTRHHVPKLKPKKTNGEVEPRRSSRLRNPVPSYREDVSIHLPALRKRSRSNSSTWGSYIARPLDEIKEATEEERLCALEAAEALQINLNSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTVYDMVLEDENGAEYEAVYIGKRTGLSGGWRAFALDHKLDDGDALVFELIEASRFKIYVVRAFPNLVEEGNMHATKVPKARCNIESESKSKRQRAAAAYETNESESSQEHIDKEVKPQGVNPSEQTKFSKRKAQKKSMLLATVDSKGKVQMKTEKPKVSLELSNKTRKSKGINEIDDPGELEKKSLVHDADRKLEKVEASKCVLKKARKKPAPKFFRKKA* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01825 388 SUPERFAMILY DNA-binding pseudobarrel domain 135 229 IPR015300 -
Lapu8g01825 388 Gene3D - 114 231 IPR015300 -
Lapu8g01825 388 MobiDBLite consensus disorder prediction 316 355 - -
Lapu8g01825 388 SMART B3_2 140 231 IPR003340 GO:0003677
Lapu8g01825 388 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Lapu8g01825 388 Pfam B3 DNA binding domain 140 227 IPR003340 GO:0003677
Lapu8g01825 388 MobiDBLite consensus disorder prediction 38 74 - -
Lapu8g01825 388 MobiDBLite consensus disorder prediction 8 25 - -
Lapu8g01825 388 MobiDBLite consensus disorder prediction 249 266 - -
Lapu8g01825 388 MobiDBLite consensus disorder prediction 249 355 - -
Lapu8g01825 388 MobiDBLite consensus disorder prediction 1 25 - -
Lapu8g01825 388 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 44 230 IPR044837 -
Lapu8g01825 388 CDD B3_DNA 138 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01825 Lapu-Chr8 35446081 35458490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01825 10 233 B3 DNA Binding Superfamily AT5G58280 52.174 3.01e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu8g01825 B3 9.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01825 - - vra:106764146 604.749