Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01804 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCAGAGCTATGGCATGCATGTGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTCTATTTCCCTCAAGGTCATAGCGAGCAGGTTGCTGCCACAACTAACCGAGAAGTGGATGGTCACATACCCAATTACCCAAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGCTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAGTTGGGCATTCCAAGTAAGCAGCCTTCAAATTATTTTTGCAAGACACTAACGGCAAGTGACACCAGCACGCATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCACCTGCGCAAGAACTGATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTCCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACGACTGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTAGTGGCTGGGGATTCTGTGCTTTTCATATGGAACGAAAAGAATCAGCTTCTCCTGGGAATACGAAGAGCCAATCGACCGCAAACTGTCATGCCATCCTCAGTTTTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGCTTTACAGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTCTCAAAATATATCAAAGCTGTGTACCATACTCGTGTGTCTGTTGGTATGCGTTTTAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGACCTGGATCCTGTTCGTTGGCCAAATTCTCATTGGAGGTCTGTTAAGGTTGGCTGGGATGAATCAACAGCAGGAGAGAGGCAGCCAAGAGTCTCATTGTGGGAAATTGAGCCTTTAACAACGTTTCCAATGTATCCATCACTATTTCCGCTCAGATTGAAGCGGCCATGGCATCCTGGCACCTCTTCTTTTCATGATGGCAGAGATGAAGCGACTAATGGGCTAATGTGGCTGAGGGGTGGAGCTGGAGACCAAGGTCTCAATTCCCTGAGTTTTCAAGGGTCTGGTTTGTTGCCATGGATGCAGCAGAGAATGGATCCAACTATGCTTGGAAATGATCATAATCAGCAGTACCAAGCCATGTTTGCATCTGGTTTGCAGAACTTAGGTAGTGGAGATCTAATGAGACAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTTCTTTGCAGCTTCAGCAACCACAAGCAATTCAGCAATCCGTTTCTTCTAATAATATCCTACAGCCACAAGCCCAAGTATTGGCAGAGAACCTGTCTCAGCATCTCCTTCAGAAATCACACAATCGTGAAGACCAACAAGCACAGCAGCAACACAGTTATCAAGACACGGTTTTACTTCAAAGTGATCAGCTCCATCAAAGGCAGCACTCTGGCTTACCTTCACCGTCATATTCAAAACCAGATTTCTTAGATTCAAGCATGAAGTTCCCTGGTACGGTTTCACCAGGACAAAATATGCTGAGTTCACTTTGTCCTGAAGGGAGTGGTAGTCTCTTGAATTTATCCCGAAGTGGTCAGTCCATGCTGACTGAACAGTTACCCCAACAATCATGGGCCCCAAAGTTTACACCATTGCAGGTCAATACTTTTGGCAACTCAATGCCCCATGTGCAATATTCTGGAAAAGATACGGCAATGGTGTCACCACATTGTAACTCAGACACCCAAAATCCTATTCTATTTGGTGTCAACATTGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATGCCACTGCATCAGCTGATACTGATGCGTCAGCAATGCCATTAGGGGAGTCTGGATTCCAAGCTCCTTTATATCCTTGCGTCCAAGATTCATCAGAGTTGTTGCGAAGTGCAGGGCAAGTTGACCCTCAAAACCAGACACGAACATTTGTCAAGGTTTACAAGTCAGGGTCAGTAGGGCGCTCACTTGACATCTCCCGGTTCAGCAGTTACCATGAGCTGAGGGAGGAGTTGGCACAGATGTTTGGTATTGAGGGAAATTAG 2271 0.4624 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLMWLRGGAGDQGLNSLSFQGSGLLPWMQQRMDPTMLGNDHNQQYQAMFASGLQNLGSGDLMRQQMMNFQQPFNYLQQSGNPNPSLQLQQPQAIQQSVSSNNILQPQAQVLAENLSQHLLQKSHNREDQQAQQQHSYQDTVLLQSDQLHQRQHSGLPSPSYSKPDFLDSSMKFPGTVSPGQNMLSSLCPEGSGSLLNLSRSGQSMLTEQLPQQSWAPKFTPLQVNTFGNSMPHVQYSGKDTAMVSPHCNSDTQNPILFGVNIDSSGLLLPTTVPRYATASADTDASAMPLGESGFQAPLYPCVQDSSELLRSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGN* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01804 756 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 755 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu8g01804 756 Gene3D - 713 756 - -
Lapu8g01804 756 Gene3D - 126 229 IPR015300 -
Lapu8g01804 756 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu8g01804 756 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Lapu8g01804 756 SMART B3_2 128 230 IPR003340 GO:0003677
Lapu8g01804 756 FunFam Auxin response factor 292 364 - -
Lapu8g01804 756 ProSiteProfiles PB1 domain profile. 717 756 IPR000270 GO:0005515
Lapu8g01804 756 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Lapu8g01804 756 MobiDBLite consensus disorder prediction 542 563 - -
Lapu8g01804 756 CDD B3_DNA 127 228 IPR003340 GO:0003677
Lapu8g01804 756 FunFam Auxin response factor 126 230 - -
Lapu8g01804 756 MobiDBLite consensus disorder prediction 542 559 - -
Lapu8g01804 756 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Lapu8g01804 756 MobiDBLite consensus disorder prediction 468 488 - -
Lapu8g01804 756 Gene3D - 292 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01804 Lapu-Chr8 35189557 35201201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01804 98 755 B3 DNA Binding Superfamily AT5G37020 67.463 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu8g01804 B3 5.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01804 - - vun:114193813 1468.37