Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01782 ATGGTTCTCTCCCAAACGGCATCGCATACCGACGTTTCTGTCCATTCAACCTTCGCCTCTCGCTATGTGCGCACATCTCTTCCCAGGTTCAAGATGGGAGAGCAATCGATCCCGAAGGAAGCGGCGTACCAGATCATAAACGACGAGCTGATGTTAGATGGAAATCCGAGGCTGAACCTGGCGTCGTTCGTGACGACGTGGATGGAGCCTGAATGCGACAAACTCATAATGGCTGCCATTAACAAAAACTACGTCGACATGGATGAGTACCCTGTCACCACTGAACTCCAGAACCGTTGCGTTAACATGATAGCTCACCTTTTCAATGCACCACTAGAAGAGTCAGAACATGCAGTTGGTGTTGGTACGGTTGGCTCATCAGAGGCCATAATGTTGGCTGGATTGGCATTCAAAAGGAGGTGGCAGAATAGAAGGAAACAAGAAGGAAAGCCTTGTGATAGTCCCAACATTGTTACTGGTGCCAATGTTCAGGTTTGCTGGGAGAAATTTGCGAGGTACTTTGAGGTGGAGTTGAAAGAGGTGAAGCTGAGTGATGGATACTTTGTAATGGACCCTGAAAAAGCAGTGGAAATGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACTTTGAACGGAGAGTTCGAAGATGTGAAGCGCTTAAATGATCTCCTAGTAGAAAAGAATCAGGAAACTGGATGGGACACTCCAATTCATGTGGATGCAGCCAGTGGTGGATTCATTGCACCCTTTCTTTATCCAGAACTTGAGTGGGACTTTCGGCTACCACTAGTCAAGAGCATCAATGTCAGTGGACACAAATATGGTCTCGTCTATGCTGGAATTGGTTGGGTCATTTGGAGAACCAAGGAAGATCTTCCTGAGGAACTCATTTTCCACATTAACTATCTTGGAGCTGATCAACCCACCTTCACTCTCAACTTCTCCAAAGGTTCTAGCCAAGTTATTGCTCAGTACTACCAACTAATTCGATTGGGTTACGAGGGATATAAAATGGTGATGGAAAACTGCAGAGACAACATGACAGTGCTTAAGGAAGGACTAGAGAAAACTGGAAGGTTTGACATTGTGTCTAAAGAGATTGGTGTCCCATTGGTGGCGTTCACTTTGAAGGACCACAGCCACTTCAATGAGTTCCAAATCTCTGACATGCTGAGGCGCTATGGATGGATAGTGCCAGCGTACACTATGCCCCCAGATGCAGAACATGTCACAGTGCTTCGTGTTGTGGTTAGGGAGGACTTTTCTCGCACCCTTGCGGAGCGTCTTGTCATCGATGTCACCAAAGTGGTGCGCGAGCTGGAGCTGCTTCCTGCTAGGGTAATCAGCAGCACCGTAACGGTTACTGGAGAAGAAGGTGATCAAGACAGTGAGGGCAAAGTATTGATTTCCAAGAAGAGCGAACTAGAGACACAGAGGGAAATCACGTCAGTTTGGAAGAAGTTTGTGATGGAGAAGAAAAAGATGAACGGTGTTTGTTAG 1512 0.4683 MVLSQTASHTDVSVHSTFASRYVRTSLPRFKMGEQSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESEHAVGVGTVGSSEAIMLAGLAFKRRWQNRRKQEGKPCDSPNIVTGANVQVCWEKFARYFEVELKEVKLSDGYFVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNQETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKMVMENCRDNMTVLKEGLEKTGRFDIVSKEIGVPLVAFTLKDHSHFNEFQISDMLRRYGWIVPAYTMPPDAEHVTVLRVVVREDFSRTLAERLVIDVTKVVRELELLPARVISSTVTVTGEEGDQDSEGKVLISKKSELETQREITSVWKKFVMEKKKMNGVC* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01782 503 PANTHER GLUTAMATE DECARBOXYLASE 1 503 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lapu8g01782 503 FunFam Glutamate decarboxylase 1 65 - -
Lapu8g01782 503 Gene3D - 66 360 IPR015421 GO:0003824
Lapu8g01782 503 Gene3D - 361 448 - -
Lapu8g01782 503 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lapu8g01782 503 CDD DOPA_deC_like 59 439 - -
Lapu8g01782 503 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Lapu8g01782 503 Gene3D - 1 65 - -
Lapu8g01782 503 FunFam Glutamate decarboxylase 361 448 - -
Lapu8g01782 503 FunFam Glutamate decarboxylase 66 360 - -
Lapu8g01782 503 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01782 Lapu-Chr8 34935975 34943221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01782 1 503 Calmodulin-binding Proteins AT5G17330 83.300 0.0 886