Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01771 ATGGTTTTGTCATGGACCAGAGGGAGAGTGTTCCGGCGTGCTCGGAAGGGGAAAGAGTTGAGTTCCGGTGGCGATTTGGAGATAGAGATTGCGATCCCCACCCACTTCCGGTGCCCGGTAACCTTGGACATGATGAAAGACCCTGTGACGATGTCCACGGGGATAACCTACGACAGAGACAGCATCGAGAAGTGGATCGAGTCCGGGAACCGCACGTGCCCGGTTACGAAGACGGAGTTGACCAGCTTCGAGATGATCCCGAACCACTCCATTCGGAGGATGATTCAGGATTGGTGCGTGGAGCACCGTTCCTACGGGATCGAACGGATCCCAACTCCCCGGATCCCGGTGACCCCTTACGAGGTTACTGACACGCTTACGAGGATCCTGTCGGCGGCACAGCACGGGGACGACAACAAGTGTGTGGAGTTGGTGAGGAAGATTAAGGCGTGGGGGAAGGAGAGTGAGAGGAACAAGAGATGCATAGTGGTCAACGGTGCTGCTCTAGCACTAGCTAACGCGTTTAACATTTTCTCACGTGGGGTGGTTGAGAAGAACGTGGTTGTGTTGGATGAGATTCTGGGGGCGTTGACGTGGATGCGTCCCCTTTCCGAAGATGGTAGATCCGTGTTGGGGTCAGTGAGTTCTATTGGTTGCATGGTTTGGTTCATGAATGGTAAACAATTGGCGACAAGGCAGAATGCTGCTTTGCTGCTTAAAGAAATGCGGGCTGAGGCGTTGATGAAATGTGAAGGGGTTTTTGAAGCTTTGGTTAACATGGTTAAGGAGCCTGTTGGGAGTGCTTCCTCCAAGGCATGTTTGTCAACGATTTTTAAGTTGGTTAATTCTTCAGGGAGTAATAGAGGTGTGACTTGCGAGAGATTCGTGGAGTTGGGTTTGGTTTCTGTCTTGTTGGAGCTTCTTGTTGATTCGGAGAGAGGAGTGTGCGAGAAGGCTTTGGGGGTGTTGGATTGTCTCTGTGATTGTAAACAAGGGGTGGAGATGGCTAAAACTAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTGTTGAGGGTGTCTGAGTTGAGTTCCAGCTTTGCTGTTTCGGTTCTTTGGAAGGTTTGTGACAAGACAGAAGAAGGAGTGTTGATTGAGGCTCTTCAAACTGGGGTGTTTCATAAACTCCTTGTTTTGTTGCAAGTGGGTTGTGGTGAGGGCACCAAAGAGAAGGCTACGGAGTTGTTGAAATTGTTGAATGGTTGCAGGAGCAAAGCTGAGTGTGTTGACTCCTCCTTGGATTTCAAGCACTTGAAGAAACCCTTCTAA 1308 0.5 MVLSWTRGRVFRRARKGKELSSGGDLEIEIAIPTHFRCPVTLDMMKDPVTMSTGITYDRDSIEKWIESGNRTCPVTKTELTSFEMIPNHSIRRMIQDWCVEHRSYGIERIPTPRIPVTPYEVTDTLTRILSAAQHGDDNKCVELVRKIKAWGKESERNKRCIVVNGAALALANAFNIFSRGVVEKNVVVLDEILGALTWMRPLSEDGRSVLGSVSSIGCMVWFMNGKQLATRQNAALLLKEMRAEALMKCEGVFEALVNMVKEPVGSASSKACLSTIFKLVNSSGSNRGVTCERFVELGLVSVLLELLVDSERGVCEKALGVLDCLCDCKQGVEMAKTNALTLPLVIKKLLRVSELSSSFAVSVLWKVCDKTEEGVLIEALQTGVFHKLLVLLQVGCGEGTKEKATELLKLLNGCRSKAECVDSSLDFKHLKKPF* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01771 435 PANTHER WDSAM1 PROTEIN 29 422 IPR045185 GO:0061630
Lapu8g01771 435 Gene3D - 124 424 IPR011989 -
Lapu8g01771 435 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Lapu8g01771 435 SUPERFAMILY RING/U-box 27 108 - -
Lapu8g01771 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 109 IPR013083 -
Lapu8g01771 435 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Lapu8g01771 435 CDD RING-Ubox_PUB 33 85 IPR045210 -
Lapu8g01771 435 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Lapu8g01771 435 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Lapu8g01771 435 SUPERFAMILY ARM repeat 125 410 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01771 Lapu-Chr8 34807488 34808893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01771 27 435 U-box Gene Family AT5G37490 46.283 1.67e-120 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01771 - - gmx:100795913 730.324