Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01770 ATGTCATTCGCTCTCATCGAAGCCTGCAAGAAGCGAAAACGGTGGCCAAAGTTTTTCAGGTTTAACTCGTTCGGTGACCCTGGTATCCCAATTGTACCTTTGGGTACTTTCCGCGATAACGTTCGGGTTTTCCTTCAAGAAGCTGGAGAACCCGAAGATTATAGTGTCTCCGGGAATCCCCTTTGGTGTACCCTTCTCATCCATGATAAGTCCAACGTTATGGCTCCTCTTTACACCGTCGAAGAGCACATCTACCATTCTTCGCACCCCTTCTGCGACCACTGCCGCTGCGTAGGTTGGAGTGGCCATTTTGTATCAAAGAGAAGGTATCATTTTATAATCCCGATGGACAGTGGGTGGCATAAGCCCTTAGATGAAGATTCTATAGATAATCAGAGGCATCTGTTGCATGGGGTGATTCATTGCAACGGGTATGGCCATTTGCTCTGTGTAAATGGCATTGAAGGAGGCTCCAAGGTTCTTAGTGGGAGAGAGATCATGGATCTATGGGATAGGGTATGCACCAACCTCCGAGTAAGGAAAGTTGCAGTCGAAGATGTTTCATGTAAGAGGTCTATGGACCTTCGCTTACTTCATGGAGTCGCCTATGGACACTCCTGGTTTGGTAGGTGGGGTTATAGATTTTGCCGTGGAAGCTTTGGAGTGACAGAACCAGACTACAATGAAGCAATGACAACGCTTGGCTCCTTGGAGCTTGACATGATTGCAAAAGATTTGAGTAAGACAAAGTACAACAAAGAAATCAAACAAATGATTCGGTGCTATAGAGATATGAGTGAGACTCATATTATCTCACTCAGGGATCTTCTAAGGTTTATGCTTACTGTAAAGTCTTCTCGTGCTCCTGCGCCTAAGATAACAGTCACCTATTCTGCTGCTGTAGCTGATTCTACCTGTTCAGCATTAATCTCAAGAAATTCAACCAAACACACACTTCCAACCAGATCAAATTCCATGAAGGAGAAATCTGTCAGGTATAAGAAGTTCAGCAATGCAGTGACTAACATGGATAGTAGGTGGCCCACAAGGAGGCTAGAGTTTGCCGCTCAAGTGATTGTGGATGCACTGAAAGAGAACAAGGCTGTGAAACCAGGCACAGGTGGGATGGCAAGGCAAGATGTGAGAGATGCAGCTAGGCTCCACATTGGTGACACAGGCTTACTTGATTATGTACTTAAATCACTCAATAATGTCATTGTTGGAAACTATGTTGTTCGTCGCATGGTGAATCCATCAACTAGAATTCTAGAGTACACTATTCATGATCTTGGGAAGGGGTACAAAGCCCCTGAACTGGAGACTGAGGTGATGGCTTATGTGGATCAACAAGTAGTAGAGTCAACTTGGGTGCCTGGTAATGATGTTTACTGCGATGTATTGTTTTTGTACAAGAATGTGCTATTGGGCTACCCTGAGTCCGAAGCAGTGGACTTGGCCATTCAGACAATTCTAGACAGCAGATACTTTGTAAAGGAGTGGGCACAGAGGGATGAAATAGAGGAGCAGTCGTTGACATTCCTTTGCCGCCTGCAACCAAATTTTGTGGACAAAAAATATGAGTTGAAAGGTCTACCGTGTGGTGAAGTTGTTGTGGTTCCACTGCATGCAACGGTTGGAGACTTGAAGAGAGCTGCTGAGGCTGTTCTTAGGGACACATACTGCATTGCAGAAAGGCTTATAGTGACAGACATTAAACAACTCATGGGAGTGAGTGATGAAGAAGTATTGTTTGGACTAATCCAGTCTGGTGTGGAACTCTGTGTGAGGGGAATTGCCATTGATTTGTGCACCAATTTGAAGTATCAGGGTGGATCTGACAACTGGAAGGTGAGATGTGAGTGTGGAGCTCAAGATGACGATGGGGAGAGAATGGTGGCTTGTGATATTTGTGAAGTGTGGCAGCATACTCGTTGCTGTGGCATAGATGATTCTGAGACCGTGCCACCACTTTTTGTCTGCACTGGTTGCTGCGATTCACTCGTTCCGTCCAGGACCGAATCATCCTTTGGTGCGGATTCTCCTGATTCTTTTCTCATTTCAGCAGACCCTTCTCTTTTGCTAGAATATGAGTATGGATGCTAA 2103 0.4527 MSFALIEACKKRKRWPKFFRFNSFGDPGIPIVPLGTFRDNVRVFLQEAGEPEDYSVSGNPLWCTLLIHDKSNVMAPLYTVEEHIYHSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDSGWHKPLDEDSIDNQRHLLHGVIHCNGYGHLLCVNGIEGGSKVLSGREIMDLWDRVCTNLRVRKVAVEDVSCKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEPDYNEAMTTLGSLELDMIAKDLSKTKYNKEIKQMIRCYRDMSETHIISLRDLLRFMLTVKSSRAPAPKITVTYSAAVADSTCSALISRNSTKHTLPTRSNSMKEKSVRYKKFSNAVTNMDSRWPTRRLEFAAQVIVDALKENKAVKPGTGGMARQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHDLGKGYKAPELETEVMAYVDQQVVESTWVPGNDVYCDVLFLYKNVLLGYPESEAVDLAIQTILDSRYFVKEWAQRDEIEEQSLTFLCRLQPNFVDKKYELKGLPCGEVVVVPLHATVGDLKRAAEAVLRDTYCIAERLIVTDIKQLMGVSDEEVLFGLIQSGVELCVRGIAIDLCTNLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSLVPSRTESSFGADSPDSFLISADPSLLLEYEYGC* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01770 700 ProSitePatterns Zinc finger PHD-type signature. 619 663 IPR019786 -
Lapu8g01770 700 SUPERFAMILY FYVE/PHD zinc finger 608 669 IPR011011 -
Lapu8g01770 700 CDD PHD_MMD1_like 619 663 - -
Lapu8g01770 700 SMART PHD_3 618 664 IPR001965 -
Lapu8g01770 700 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 674 - -
Lapu8g01770 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 668 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01770 Lapu-Chr8 34793666 34796528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01770 10 669 PHD Transcription Factor Family AT5G22260 33.946 1.44e-120 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01770 K26271 - gmx:100797388 1257.66