LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu8g01753	ATGGGAAGACAGCCATGTTGTGATAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAGCTCATCACTTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTTCCTAAGCTTGCAGGACTATTAAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGACAAACTACCTTAGACCAGACTTGAAGAGAGGCCTGCTTTCAGAATACGAAGAGAAAATGGTCATTGATCTTCATGCTGAACTTGGCAATAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATAAAAAACCATTGGAACACCCACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCCATCACTCACAAACCACTCCCTAATGCAACTGAACAAACTCAAAATCAACCCAAACAACAACAACTAAACCAACCACTAGAAGAAGGGCAAAACCAACAACCTTTGCAAGTTGAGTTTGACAGCAAGGTTGACCCTGATAAGGAGCCAGAGATTTCAGTGGAGTCATCAACCATGACTGAAGCCAAAGAGGAAGAAGAACAAATCATAGCAACACCCCAATTTGACACAATGGAGCTTAATCAGCTAGTGAATGGGTTCTGCACAGATGAAGTTCCAATAATTGAGCCTGATGAGATTCTAATGCCTTGTGCTCCTTCCTCTTCATCCACCTCTACTACATCTTCTTCAAATTCAACCAGCATCCTTGAAGACCTGCTGCTACCTGATTTTGAATGGTCTTGTAATTATAGCGATAGTAGTCTTATTATTAACAATAACAACCATGAAGACAACAACAACAACAATAGCAGTATGGCCTTGTGGGATGATGATGATGATGACTTTATTAGCAAACTTAACTGGCTGATTAATGAAGATGATGATTGTGATGGAAACCAAGTGTTTGATGGTCCTCTCTCTCAGTTCTCAAGAATGGTCACGGATTCAGAATCTTGGGCATTTGGCTTGTTTTGA	1002	0.4172	MGRQPCCDKVGLKKGPWTAEEDKKLITFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAELGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPITHKPLPNATEQTQNQPKQQQLNQPLEEGQNQQPLQVEFDSKVDPDKEPEISVESSTMTEAKEEEEQIIATPQFDTMELNQLVNGFCTDEVPIIEPDEILMPCAPSSSSTSTTSSSNSTSILEDLLLPDFEWSCNYSDSSLIINNNNHEDNNNNNSSMALWDDDDDDFISKLNWLINEDDDCDGNQVFDGPLSQFSRMVTDSESWAFGLF*	334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu8g01753	333	Gene3D	-	11	67	-	-
	Lapu8g01753	333	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Lapu8g01753	333	CDD	SANT	16	61	IPR001005	-
	Lapu8g01753	333	Gene3D	-	70	151	-	-
	Lapu8g01753	333	FunFam	MYB transcription factor	11	67	-	-
	Lapu8g01753	333	MobiDBLite	consensus disorder prediction	163	188	-	-
	Lapu8g01753	333	FunFam	MYB transcription factor	70	147	-	-
	Lapu8g01753	333	MobiDBLite	consensus disorder prediction	122	188	-	-
	Lapu8g01753	333	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Lapu8g01753	333	SMART	sant	66	114	IPR001005	-
	Lapu8g01753	333	SMART	sant	13	63	IPR001005	-
	Lapu8g01753	333	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Lapu8g01753	333	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Lapu8g01753	333	CDD	SANT	74	112	IPR001005	-
	Lapu8g01753	333	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Lapu8g01753	333	PANTHER	F14D16.11-RELATED	1	279	-	-
	Lapu8g01753	333	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Lapu8g01753	333	Pfam	Myb-like DNA-binding domain	71	111	IPR001005	-
	Lapu8g01753	333	MobiDBLite	consensus disorder prediction	129	161	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu8g01753	Lapu-Chr8	34557940	34560392	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu8g01753	1	333	MYB Transcription Factor Family	AT5G16600	48.077	3.07e-98	291

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lapu8g01753		Myb_DNA-binding	2.2e-12	CL0123