Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01731 ATGGAGGAGGCTCCTCCGGCGGAGGCAGTTGCCGTACGGCGAGCCTTGGAGCTGTTGCAGCTAAACGACCCCGTTTTGAGGGTCCAAGCAGCCAGGGACATCCGCCGCCTCACCAAAACCTCACCCCGCTGCCGCCGCCACCTTCGCCAGGCCGTCTCCCCACTCGTCTCCATGCTCCGAGTCGATTCGCCCGAGTTCCACGAATCGGCGCTTCTCGCTCTCCTCAACCTCGCCGTACAAGACGAAAAGAACAAAATTAACATTGTGGAAGCTGGTGCATTAGAGCCAATAATCAGTTTCCTCAAGTCACAAAATCCAAATCTGCAGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGCCTCTCCAACCAACAAACCAATCATCAGTGCTTGTGGAGCCATTCCTCTCCTTGTAAATACTCTTAGAGATGGAAGCTCCCAAGCTAAAGTTGATGCGGTGACGGCTTTGTCCAATTTATCAACACACCCTGATAACCTCAGCATCATTCTCGAAACAAATGCAATGCCCTTTATAGTTAGTCTTCTGAAAACCTGTAGAAAATCGTCAAAAATAGCTGAAAAATGTTCTGCTCTGATAGAATCCTTGGTGAGTTATGAGGAGGGCAGAACTGCCTTAACATCTGAAGAAGGTGGGATTCTTGCAGTTGTGGAAGTTCTGGAAAATGGTACTCCCCAGAGTAGGGAACATGCTGTTGGAGCACTGCTGACAATGTGCCAAAGTGATAGATGTAAATACAGGGAACCAATTCTTAGAGAAGGTGTTATTCCGGGACTTCTTGAGCTTACAGTTCAAGGAACCCCTAAATCACAGCCAAAAGCACGTACCCTTTTGCAGTTACTTAGAGAGTCTCCATATTCAAGACCTGAAGCTGAACCTGACACTCTTCAGAACATAGTGTGTGACATCATATCCCAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTCCAAGTCAGCATGGAGCAGAGTTTGAGACATTTGCAGCAAAGGGCTCTTGTATGTACCCCTAGTGATTTGCCTATCACAAGTTGTGCTTCTGAAGTTTCTTCAAAATAG 1101 0.475 MEEAPPAEAVAVRRALELLQLNDPVLRVQAARDIRRLTKTSPRCRRHLRQAVSPLVSMLRVDSPEFHESALLALLNLAVQDEKNKINIVEAGALEPIISFLKSQNPNLQEYATASLLTLSASPTNKPIISACGAIPLLVNTLRDGSSQAKVDAVTALSNLSTHPDNLSIILETNAMPFIVSLLKTCRKSSKIAEKCSALIESLVSYEEGRTALTSEEGGILAVVEVLENGTPQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPEAEPDTLQNIVCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPITSCASEVSSK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01731 366 SMART arm_5 206 247 IPR000225 GO:0005515
Lapu8g01731 366 SMART arm_5 41 79 IPR000225 GO:0005515
Lapu8g01731 366 SMART arm_5 81 121 IPR000225 GO:0005515
Lapu8g01731 366 SMART arm_5 122 162 IPR000225 GO:0005515
Lapu8g01731 366 SMART arm_5 163 205 IPR000225 GO:0005515
Lapu8g01731 366 Pfam Armadillo/beta-catenin-like repeat 82 120 IPR000225 GO:0005515
Lapu8g01731 366 Pfam Armadillo/beta-catenin-like repeat 125 161 IPR000225 GO:0005515
Lapu8g01731 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 134 IPR000225 GO:0005515
Lapu8g01731 366 SUPERFAMILY ARM repeat 14 300 IPR016024 -
Lapu8g01731 366 FunFam U-box domain-containing protein 4 1 348 - -
Lapu8g01731 366 PANTHER U BOX DOMAIN-CONTAINING 11 292 - -
Lapu8g01731 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 133 175 IPR000225 GO:0005515
Lapu8g01731 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 50 92 IPR000225 GO:0005515
Lapu8g01731 366 Gene3D - 2 349 IPR011989 -
Lapu8g01731 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 174 218 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01731 Lapu-Chr8 34341604 34345541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01731 51 289 U-box Gene Family AT2G23140 35.983 2.93e-37 140