Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01721 ATGGGGTGCTGCTTCAGTGCCAAGATCAAAGCTGAGAGCCCTCCACGTAACGGTTTGAGCTCAAAGGATGGTAACAAAGAAGAGGATGGCTTGAGCAGCAAGATCTCCACTCCCTCCGTGCCTCCAACTCCACGGACAGAGGGTGAGATCTTGAAGTCCTCAAATATGAAGAGTTTCACCTTTGGTGAGCTAAAAACTGCTACAAGGAACTTTCGTCCGGATAGTGTGGTCGGTGAAGGTGGGTTTGGTTGTGTTTTCAAGGGATGGATTGATGAGCAATCACTTGCACCAGTTAGACCAGGCACTGGATTGGTCATTGCTGTGAAGAGGCTTAACCAAGAAGGTCTGCAGGGACACAGTGAATGGTTGACAGAAATAAACTATCTGGGGCAGCTGCATCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTAGAGGATGACCAAAGGCTTTTGGTGTATGAGTTTTTGACAAAGGGAAGTTTGGACAATCATTTATTTAGGAGAGCTTCTTACTTTCAACCACTTTCTTGGAACATCCGGATGAAGGTTGCCCTTGATGCTGCTAAGGGTCTTGCATATCTCCATAGTGATGAAGCCAAAGTGATATATAGAGACTTCAAAGCTTCAAATATCTTACTTGATTCAAATTACAACGCAAAACTTTCTGATTTTGGCTTGGCAAAGGATGGACCAGCAGGTGATAAAAGCCATGTCTCTACAAGGGTAATGGGCACATATGGCTATGCTGCTCCTGAATATATGGCCACAGGTCACTTGACAAAGAAGAGTGATGTATACAGTTTTGGGGTTGTTCTGCTTGAAATTATGTCTGGAAAACGTGCCCTTGACAGCAACAGGCCAAGTGGGGAGCACAATTTAATTGAATGGGCCAAACCATATCTCAGCAACAAACGTAGGATCTTCCAAGTCATGGATGCTCGCATAGAAGGACAATACACAATGCGTGAAGCGATGAAAGTAGCCAACCTTGCCATTCAATGCCTCTCTGTGGAGCCAAGATTTAGACCAAAAATGGATGAAGTGGTGAGAACATTGGACGAACTTCAGGATTCTGGTGACAAAGCTGTTGCAGGGGTGGGAAGCTATAGTGATCAAACTGTTAGAAGGAGTGGTCATAGCTCAAGCAGCAGTGGCTACAGACAACATAGAGGTAAACAACATGAAACAACAAAGAAGTAA 1203 0.4447 MGCCFSAKIKAESPPRNGLSSKDGNKEEDGLSSKISTPSVPPTPRTEGEILKSSNMKSFTFGELKTATRNFRPDSVVGEGGFGCVFKGWIDEQSLAPVRPGTGLVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDQRLLVYEFLTKGSLDNHLFRRASYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKASNILLDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDSNRPSGEHNLIEWAKPYLSNKRRIFQVMDARIEGQYTMREAMKVANLAIQCLSVEPRFRPKMDEVVRTLDELQDSGDKAVAGVGSYSDQTVRRSGHSSSSSGYRQHRGKQHETTKK* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01721 400 Pfam Protein tyrosine and serine/threonine kinase 75 353 IPR001245 GO:0004672|GO:0006468
Lapu8g01721 400 FunFam Probable serine/threonine-protein kinase PBL8 157 372 - -
Lapu8g01721 400 SUPERFAMILY Protein kinase-like (PK-like) 44 352 IPR011009 -
Lapu8g01721 400 ProSitePatterns Protein kinases ATP-binding region signature. 77 109 IPR017441 GO:0005524
Lapu8g01721 400 MobiDBLite consensus disorder prediction 363 400 - -
Lapu8g01721 400 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
Lapu8g01721 400 MobiDBLite consensus disorder prediction 1 49 - -
Lapu8g01721 400 FunFam Serine/threonine-protein kinase BIK1 38 156 - -
Lapu8g01721 400 CDD STKc_IRAK 77 356 - -
Lapu8g01721 400 PANTHER OS01G0588500 PROTEIN-RELATED 37 357 - -
Lapu8g01721 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Lapu8g01721 400 Gene3D Transferase(Phosphotransferase) domain 1 157 372 - -
Lapu8g01721 400 MobiDBLite consensus disorder prediction 371 388 - -
Lapu8g01721 400 MobiDBLite consensus disorder prediction 31 49 - -
Lapu8g01721 400 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01721 Lapu-Chr8 34275743 34280328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01721 1 372 Glycoside Hydrolase AT3G07070 45.692 2.26e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu8g01721 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01721 - - gmx:100775335 746.503