Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01703 ATGTCTTCTCATTGGTGTTTCCGGTGCAACAAATTTGTCAGAGTAAGGAGGCAAGAAATGCCGATGTGTCCAGATTGTGACAGTGGATTCGTCGAAGAGATGGACCCTTCCAGCCGCCCCGCCCATGTCGAAAACCGCCGCCGTCGGTTCCCCACGGCAGCGGCCATGTACATGATAGGCCATCGTTCCGGTAACTCTGACCACATTCCCCGTTCCTCTCGCCATCATCATTGCAGAACGGTCACCGGCGACCGGTCACCTCTCAACCCTGTCATCATGCTCCGCGGCGAGGGGTCCAGCCACGAACGTGGCTCCAGTTTCGACCTTTTCTACGACGATGGCGCTGGTACCGGTCTCCGACCACTCCCTCCGAGAATGTCCGAGTTTCTCCTTGGAACAGGGTTCGACCGTGTGATGGACCAACTTTCCAACGTGGAGTCTAACTCCAGGTCTGGGAGGCACGACCAGCACCACGCGCCGGCTTCTAAAACCGCCGTTGAGGCTTTGCCAGCGATTGAGATAAACGCGTCCCACATGGTGTCTGAGTCACACTGCGCGGTCTGCAAAGAGCCTTTTGAGCTTTCCACCATGGCGAGAGAAATGCCATGCAAACACATATACCATTCGGAATGCATCTTACCGTGGCTCGCGATTCGGAACTCATGCCCCGTGTGCCGCAACGAGTTGCCTGTTGAGAACGCGCGTGAGGGGTCGGAGCGTGTGGAGGAGGAAGAGAACAATGTGGGGTTGACGATTTGGCGGTTACCGGGTGGAGGGTTTGCGGTGGGAAGGTTGGGGAGAAGAGAGGGTGAGAGAGAGGTTAATGTTCCTCTTGTATACACGGAAGTGGATGGTGGGTTAAACTTTAACAACGTTGTTATGGGTGAACCCAGAAGGATTTCTTGGTCGGTTTCGGAGACTCCAGGGAGGAGAAGAGGTGGCGCGTTTAGAAGAATGTTTAACGGTTTGTTTAGTTGCTTGAGAGGTGGTGGGGTTGGGCCTCAACGTTCTTCTAGTTCTGGTTCTTCGAGAACCCCGATGAGTACCAGTGTTAGGGCTTCGCGTCCTAACATGGGTCCTTCTGCATCGTCGCGTAGGACTTGGTCAATGGATGTCAACGGTGGAACCAGACTATGGTAA 1140 0.5465 MSSHWCFRCNKFVRVRRQEMPMCPDCDSGFVEEMDPSSRPAHVENRRRRFPTAAAMYMIGHRSGNSDHIPRSSRHHHCRTVTGDRSPLNPVIMLRGEGSSHERGSSFDLFYDDGAGTGLRPLPPRMSEFLLGTGFDRVMDQLSNVESNSRSGRHDQHHAPASKTAVEALPAIEINASHMVSESHCAVCKEPFELSTMAREMPCKHIYHSECILPWLAIRNSCPVCRNELPVENAREGSERVEEEENNVGLTIWRLPGGGFAVGRLGRREGEREVNVPLVYTEVDGGLNFNNVVMGEPRRISWSVSETPGRRRGGAFRRMFNGLFSCLRGGGVGPQRSSSSGSSRTPMSTSVRASRPNMGPSASSRRTWSMDVNGGTRLW* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01703 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 232 IPR013083 -
Lapu8g01703 379 MobiDBLite consensus disorder prediction 67 82 - -
Lapu8g01703 379 Pfam Ring finger domain 184 226 IPR001841 -
Lapu8g01703 379 MobiDBLite consensus disorder prediction 332 371 - -
Lapu8g01703 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 119 230 - -
Lapu8g01703 379 MobiDBLite consensus disorder prediction 63 90 - -
Lapu8g01703 379 FunFam E3 ubiquitin-protein ligase RING1-like 146 232 - -
Lapu8g01703 379 Pfam Protein of unknown function (DUF1117) 248 354 IPR010543 -
Lapu8g01703 379 MobiDBLite consensus disorder prediction 330 379 - -
Lapu8g01703 379 SUPERFAMILY RING/U-box 165 231 - -
Lapu8g01703 379 SMART ring_2 185 225 IPR001841 -
Lapu8g01703 379 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Lapu8g01703 379 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01703 Lapu-Chr8 34105593 34106732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01703 119 233 C3H Transcription Factor Family AT5G01980 40.000 1.11e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01703 K11982 - gmx:100789228 570.466