Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01678 ATGCCCCTTCTTCTCCATCTCTCTGTCATTTTCATTCCTCTTCCTCCCTTTTCCCTTCCCTCATCTTCTCTCTCACAACATTGCTTTTTCCTCCTCATGGCTCCCTCTTCAGATGTCAACCATCTTTCTCATCCATGCATATACGGGGATTATATTTCTCCTCGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTCAGTAAACTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAAGAAAGCATAGTTTGGGGAGCTCCATCAAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATCTAGGGCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGGCCAAACGCTCATCAAGGATATAGTTGGGGAGAAGACACTGGAGACGATTATTCAAAGGCACCTTTGGATAACCTTAGCTCATCTGCACACCCTCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGGTGCATGGATACGTATTTTCACCCAAATTGCTTTCGCTGTCATTCCTGTCGCTACCCTATTACCGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCATAAATCCTGCTTTAAAGAGTTGACTCATCCAAAGTGTGAAGTTTGCTTCCAATTTATCCCTATAAATGCAGCTGGCTTGATTGAGTACAGGTGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAGAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGGAGCTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGCCAGCCCCTTTACCATTCTATCCGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTTAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCTACATTTACCAGAAACAAGAGGTTTATGCCTTTCAGAGGAGCAAACTGTGACCAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTCATTGGGATGAGAACTCAACATCAAAAACTGATTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTTCCTAGATTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGGCTGGCTACGCCTTAAAGGTTACCGCAACCTTAACCCTGAAGTAGAGGAAGGCATTTGTCAGGTTCTTTCCTATATGTGGCTTGAGTCAGAAGTAATGCCTACCTTTCAAAGCATGCCATCAACATCCACAGCTGCTGCTTCTTCATCCTCCTCAAAGAAGGGTGCAAAGTCTCACGTTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGATTTTTTCCAGTGTAA 1608 0.4291 MPLLLHLSVIFIPLPPFSLPSSSLSQHCFFLLMAPSSDVNHLSHPCIYGDYISPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESIVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYSWGEDTGDDYSKAPLDNLSSSAHPPFAPTPFYPHEYRRICGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQHQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPTFQSMPSTSTAAASSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGFFPV* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01678 535 CDD LIM_DA1 174 226 - -
Lapu8g01678 535 PANTHER PROTEIN DA1-RELATED 2 65 534 IPR045218 -
Lapu8g01678 535 Gene3D Cysteine Rich Protein 161 231 - -
Lapu8g01678 535 Pfam Protein DA1 323 529 IPR022087 -
Lapu8g01678 535 FunFam Protein DA1-related 2 162 227 - -
Lapu8g01678 535 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 199 - -
Lapu8g01678 535 ProSiteProfiles LIM domain profile. 172 232 IPR001781 -
Lapu8g01678 535 ProSitePatterns LIM zinc-binding domain signature. 174 208 IPR001781 -
Lapu8g01678 535 SMART lim_4 173 225 IPR001781 -
Lapu8g01678 535 Pfam LIM domain 174 227 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01678 Lapu-Chr8 33871413 33876102 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu8g01678 DA1-like 4.8e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01678 - - gmx:100784976 1001.12