Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01648 ATGATTTTTCCAAGATTTTGTACGAATCTAAAAGGTATGGAATTGGAAACCCTCTACCCCCCTTGTTTTATGCCAGATTCAAATTGGTTTGTGCAAGAGAGCCACGACACAGAATGGACTAGAGAGGATAACAAGAAGTTTGAAAGTGCCCTTGCTATATATGACAAGGACACCCCAGATAGATGGTTCAAGGTGACAGCCATGATCCCTGGGAAGACTGTGTTCGACGTGATCAAGCAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGTTATCTTGCCTCTTCTTTTACCTTTGAGCTGGTTGACAACCACAACTATGATGGATGCAGAAGAAGGCCTGCACCTATCAGAGGTTCTGATCAAGAGAGAAAGAAAGGTGTCCCCTGGACTGAAGAGGAACACAGGCGTTTTCTGATGGGACTTCTAAAGTATGGTAAAGGAGACTGGAGAAATATCTCTCGCAATTTTGTGGTCACAAAGACTCCCACCCAAGTTGCCAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGGAAAGATAAAAGAAGACCTAGCATCCATGATATAACCACTGTTAACCTTACAGAAACTGCTGCATCAGATAAGATCAAGACTCCGTTATTTAATGTGTCGCCCATGATTATTACACCAGAGCAGAAGCTGAATAGCATGTCAAAAGTACACTTGGACTGGACTAGCCACTGCAATGATGGATCACTCATGGTTTTCAACCCAAATAGTGATAACTTATTTGTGTCATCTTCAACTGATATCACTTCTATGGCCCTGAAAATGCAAGGGCAGGATCTCTATGACTGTGCTTTACATGAGGCTTATGCCAAGGTAAAAGTTCCAGGTTTCGGCATGGCTCCTAGAGACTTCAATAATGAAGCTGTTTTCGGTATTCATGCACTGTAG 957 0.4295 MIFPRFCTNLKGMELETLYPPCFMPDSNWFVQESHDTEWTREDNKKFESALAIYDKDTPDRWFKVTAMIPGKTVFDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVDNHNYDGCRRRPAPIRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAASDKIKTPLFNVSPMIITPEQKLNSMSKVHLDWTSHCNDGSLMVFNPNSDNLFVSSSTDITSMALKMQGQDLYDCALHEAYAKVKVPGFGMAPRDFNNEAVFGIHAL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01648 318 CDD SANT 38 84 IPR001005 -
Lapu8g01648 318 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Lapu8g01648 318 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Lapu8g01648 318 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 186 IPR006447 GO:0003677
Lapu8g01648 318 SMART sant 35 87 IPR001005 -
Lapu8g01648 318 SMART sant 135 185 IPR001005 -
Lapu8g01648 318 SUPERFAMILY Homeodomain-like 37 91 IPR009057 -
Lapu8g01648 318 Pfam Myb-like DNA-binding domain 138 182 IPR001005 -
Lapu8g01648 318 SUPERFAMILY Homeodomain-like 133 187 IPR009057 -
Lapu8g01648 318 Gene3D - 31 98 - -
Lapu8g01648 318 Gene3D - 137 188 - -
Lapu8g01648 318 FunFam Transcription factor SRM1 31 98 - -
Lapu8g01648 318 FunFam transcription factor MYB1R1 137 188 - -
Lapu8g01648 318 CDD SANT 138 182 IPR001005 -
Lapu8g01648 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Lapu8g01648 318 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 32 248 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01648 Lapu-Chr8 33519775 33522095 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu8g01648 Myb_DNA-binding 1.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01648 - - ccaj:109813886 593.193