Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01612 ATGTGTAGTGATTCAAAGAGTAAGCTTTCTTCCCCGAGCCTCGTGATGGAGAATAATCTTCAGAAGCAGAATCTTGATGGTTTCTGCAACTTCTCGTCTTTGCTTGAACTGTCTGCATCCGATGATTTTGAAGCTTTCAAAAAAGAAGTGGACGAGAAGGGCTTAGATGTCAACGAGGCTGGGTTTTGGTATGGTAGAAGGATTGGGTCAAAGAAGATGGGATCTGAAACGAGGACCCCCCTCATGATTGCTTCTTTGTTTGGAAGCACTAGGGTTCTCAAGTATATTCTTGAAGCAGGAACTGTTGATGTGAACAGGGCCTGTGGTTCTGATAGGGCCACTGCTCTACACTGTGCTGCCGCTGGGGGCTCTGAATCCTCACCTGAAATTGTGAAGCTCTTGCTAGATGCTGGGGCTGATGCTGAATCGCTTGATGCCAGTGGAAACAAGCCGGCTAGTCTGATTGCTCCTGCCTTTGATTCTTCCTCCAAAGCCCGGAGGAAGGCCGTGGAGTTGTTCCTCAGGGGTGGTGAGAGAGATGAACTGATGAGCCAGGAAATGGAGCTGCAGATGTTCTCCGTTCCTTCCTCATCAAAAGAAGGTGCTGAGAAAAAAGAAGGAAGTGATAAGAAAGAGTATCCTGTTGATATATCCTTGCCTGATATCAACAACGGTGTGTATGGAACAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCATACTCCCATGACTGGACCGAGTGTCCATTTGTTCATCCTGGCGAGAACGCTAGGAGGAGAGACCCAAGGAAGTACCCTTATAGCTGTGTTCCTTGCCCCGAATTTCGCAAAGGGGCCTGCCAGAAGAGTGATTCCTGTGAGTATGCTCATGGTGTTTTTGAGTCCTGGCTACACCCTGCCCAGTACAGAACAAGGCTTTGCAAGGATGAGACGGGCTGCAGCAGAAAAGTCTGCTTCTTTGCCCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCCACTGGGTCAGCTATGCCTTCACCCAAATCCTATTCAGCTAGTGCACTAGACATGACAGCCATGAGTCCATTGGCTCTCAGTTCCACATCTTTGCCTATGCCTACTGTTTCAACCCCACCCATGTCTCCCTTGGCTGCAGCTTCATCTCCAAAGAGTGGAAGCTTGTGGCAAAACAAAATAAACCTTACTCCACCATCCCTGCAGCTCCCAGGTAGCCGACTCAAGGCTGCTTTGAGTGCCAGGGATCTGGAGATGGAGATGGAACTGCTGGGTCTGGATAGTCCAGCTCGCCAACAGCAGCAGCAGCAACAACAATTGATAGAAGAGATTGCCAGGATCTCTTCCCCGTCTTTCCGCAAGAAGGAATTCAATAGGATTGGTGATTTGAATCCAACCAACCTTGATGACCTGTTAGCCTCTGCTGATCCTTCTGTGTTATCACAGCTACATGGACTTTCTGTGCAGCCTTCAACACCCACCCAAAGTGGGCTTCAGATGCGCCAAAACATGAACCACCTTCGTGCGAGTTATCCATCCAACATCCCTTCCTCTCCTGTGAGGAAGCCCTCAGCTTTTGGGTTTGATTCATCTGCTGCTGTAGCAGCTGCAGTGATGAACTCCAGGTCTGCAGCCTTCGCCAAGCGAAGCCAAAGTTTCATCGATCGTGGAGCTGCAACCCACCATCTTGGCCTGTCTTCACCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTTTCAGATTGGAGTTCCCCTACTGGGAAACTGGATTGGGGTGTTAACGGAGACGAGCTAAACAAGCTGAGGAAATCTGCTTCATTTGGGTTCAGAAACAATGGGTTAACTGCTTCCCCCATAGCTCAGCCAGAACATGTTGAGCCAGATGTCTCATGGGTTCATTCATTGGTTAAGGATGTTCCTTCTGAGAGGTCTGAGATGTTCGGTGCTGAGAAGCAACAATATGATCTGAGTAAAGAGATGCTGCCACCATGGGTGGAGCAGCTGTACATAGAGCAGGAGCAGATGGTAGCATGA 2046 0.4922 MCSDSKSKLSSPSLVMENNLQKQNLDGFCNFSSLLELSASDDFEAFKKEVDEKGLDVNEAGFWYGRRIGSKKMGSETRTPLMIASLFGSTRVLKYILEAGTVDVNRACGSDRATALHCAAAGGSESSPEIVKLLLDAGADAESLDASGNKPASLIAPAFDSSSKARRKAVELFLRGGERDELMSQEMELQMFSVPSSSKEGAEKKEGSDKKEYPVDISLPDINNGVYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACQKSDSCEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASALDMTAMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELLGLDSPARQQQQQQQQLIEEIARISSPSFRKKEFNRIGDLNPTNLDDLLASADPSVLSQLHGLSVQPSTPTQSGLQMRQNMNHLRASYPSNIPSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGAATHHLGLSSPSNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNNGLTASPIAQPEHVEPDVSWVHSLVKDVPSERSEMFGAEKQQYDLSKEMLPPWVEQLYIEQEQMVA* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01612 681 SMART ANK_2a 111 143 IPR002110 GO:0005515
Lapu8g01612 681 SMART ANK_2a 76 106 IPR002110 GO:0005515
Lapu8g01612 681 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Lapu8g01612 681 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Lapu8g01612 681 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Lapu8g01612 681 SUPERFAMILY Ankyrin repeat 29 155 IPR036770 -
Lapu8g01612 681 ProSiteProfiles Zinc finger C3H1-type profile. 271 298 IPR000571 GO:0046872
Lapu8g01612 681 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Lapu8g01612 681 MobiDBLite consensus disorder prediction 192 215 - -
Lapu8g01612 681 Pfam Ankyrin repeats (3 copies) 72 142 IPR002110 GO:0005515
Lapu8g01612 681 Gene3D - 272 334 - -
Lapu8g01612 681 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Lapu8g01612 681 Gene3D - 31 174 IPR036770 -
Lapu8g01612 681 MobiDBLite consensus disorder prediction 199 215 - -
Lapu8g01612 681 PANTHER UNKEMPT FAMILY MEMBER 36 643 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01612 Lapu-Chr8 33150084 33153423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01612 31 676 C2H2 Transcription Factor Family AT5G12850 39.745 2.55e-144 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu8g01612 Ank_2 1.6e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01612 - - gmx:100783376 1145.57