Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01605 ATGGAAAGTTACCACTATTCTGGGTGGCCTCTTGCCACCAACGTGGCTCAGTGCAACTCTGCACCAAACAGTGATCAATTATCTCCTTTTTCAGTTCCAACAACTCAAACACTCCCTCTTGTTTCTGACCCTGCCTCTCTTCAGTTTAGTGAGTTCCCTTTGTGGCCTGCAACTATTGCAGAAGATAGAGCTGCAAGTGCTTCAAAGAGTCACAGCCAAGCAGAGAAAAGGCGCAGGGACAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAAGCGAAAAGCCATGTGTGTGAGCAAAGCCATTACTGTTCCAACTGAAACTGATGAAGTAACAATTGACTTCCACCAAGCTCAAGATGAAAGTTACACAAAAGTGAACATATTCAAGGAAAACATCATAATCAAAGCTTCTGTTTGTTGTGATGATCGACCAGAAGTGTTCCCTGAGCTCATTCAAGTCCTCAAAGGGTTGAGACTCACAGCAGTTAAGGCTGACATAGCTAGTGTGGGTGGCAGAATCAAAAGCATATTGGTTCTTTGCACAAAGGATAGTGAAGAGAACAGTGTTTGCCTTAGCACTGTCAAACAATCACTTAAATCAGCTGTCAACAAAATTGCTTCGTTATCCGTGGCAACTAATTGTCCCACTAGAAGTAAGAGGCAGAGGTTCTTCTTCCCTTCTCATTACGTACAATCATAG 774 0.4328 MESYHYSGWPLATNVAQCNSAPNSDQLSPFSVPTTQTLPLVSDPASLQFSEFPLWPATIAEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAMCVSKAITVPTETDEVTIDFHQAQDESYTKVNIFKENIIIKASVCCDDRPEVFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCTKDSEENSVCLSTVKQSLKSAVNKIASLSVATNCPTRSKRQRFFFPSHYVQS* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01605 257 Pfam Helix-loop-helix DNA-binding domain 69 115 IPR011598 GO:0046983
Lapu8g01605 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 115 IPR011598 GO:0046983
Lapu8g01605 257 SMART finulus 72 121 IPR011598 GO:0046983
Lapu8g01605 257 Gene3D - 60 122 IPR036638 GO:0046983
Lapu8g01605 257 PANTHER TRANSCRIPTION FACTOR BHLH30 58 253 IPR045847 GO:0003700|GO:0006355
Lapu8g01605 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 119 IPR036638 GO:0046983
Lapu8g01605 257 CDD bHLH_AtAIG1_like 61 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01605 Lapu-Chr8 33049657 33052001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01605 62 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 48.000 9.63e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu8g01605 HLH 7.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01605 - - gmx:100306102 428.713