Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01603 ATGTCGATTCGCGATTCCGAAGCCTTCAATTGGCACTACGACACAGAGCTCGACGACCAAACCCTCGAAATCCGCGGCCGCAAGCTCTTCTTCATCATCGTCCTTTTCTCCATCATCCTCCTCTTCACTGCGCTCTTCGTCTTCGCGCGCCGGATCTGCCGCCACCACGGCCTCCTCTTCGACGCCGTCCCGCCGCACCACGCGCCGCCCACGCTTCCGTCTCAGGACGGCCTCGACGCCGCCGCGATCAAGCGGCTGCCGATCATCCTGCACCAGCGCTCCGCGGCGGAGGAGGCGGAGTGCTGCATCTGCCTCGGCGCGTTCGTAGACGGCGCGAAGCTCAAGGTTCTCCCTGGATGCGACCACAGCTTCCACAGCGAGTGCGTGGACAAGTGGCTCGCGAATCACTCCAACTGCCCTCTCTGCCGAGCTTCGCTGAAACTCGATCCTTCGTTTCCGAGGATTTTGATCCAAGCGCCACCCGTTAGAACCACTCTTCCTCTCTGA 507 0.6193 MSIRDSEAFNWHYDTELDDQTLEIRGRKLFFIIVLFSIILLFTALFVFARRICRHHGLLFDAVPPHHAPPTLPSQDGLDAAAIKRLPIILHQRSAAEEAECCICLGAFVDGAKLKVLPGCDHSFHSECVDKWLANHSNCPLCRASLKLDPSFPRILIQAPPVRTTLPL* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01603 168 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 148 - -
Lapu8g01603 168 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Lapu8g01603 168 Pfam Ring finger domain 100 143 IPR001841 -
Lapu8g01603 168 SUPERFAMILY RING/U-box 87 150 - -
Lapu8g01603 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 148 IPR013083 -
Lapu8g01603 168 SMART ring_2 101 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01603 Lapu-Chr8 33025823 33026475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01603 11 151 C3H Transcription Factor Family AT3G11110 44.218 2.39e-32 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01603 - - gmx:100794554 278.1