Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01602 ATGGCCTCTCTCCAACCTCAACCCCAAGAAACCAAACCCACCGCCACCACCGCCACACCCTCCACTCCCAGCCAAACATCTAACACTTCCAACCCCCCAAATCACACCCCCAACAACAAAACTAGTCGTAAATGCAAAGGTAAAGGTGGCCCCGACAACAACAAATTTAGGTACCGCGGCGTCAGACAACGAAGCTGGGGCAAATGGGTTGCCGAGATCCGCGAGCCACGTAAGCGCACGCGCAAGTGGCTCGGCACCTTCGCCACCGCCGAAGACGCCGCCAGAGCCTATGACCGCGCCGCCCTCATCCTCTATGGTTCCCGGGCACAGCTCAATCTCCAACCCTCCGGTTCCTCTTCTCACTCTTCCTCCTCTCGTACCATTTCTTCCTCTTCCACTCAAACCCTAAGACCCTTGCTTCCTCGCCCCTCAGGTTTTGCTTTCAATTTTCCCTTCCATGCCGCGACCCTGCCCTACCCTTGCTCCGCCGCGTATGCCACCACTTTCAATTACACCCAGCAGATGCTGTGCCCTAATGAGAATATTAATAATACAGTGCATGTTCATCATCATCGTCGCCCCGAGGAAGTGGTGCAAGTACCACATGCTCCATCACCATCACATCAAAATTCGGAATCCGATTTGAGTGTGGGTGGGAATAATACCACTGATGATAGTTCCATTAGATCAACCTCGTACCAAAGGCATGGTCACCAGGATAAAAACCGTCTGCATGTGCAACATGGTGATTCCTCGAATCAACAGCAACATCAGAACAGCGTTGTCGATGAAGAGAAGTCCGTTGTGGGTTCGGATGAGTCTTCTCAGGTAAATATGGAGGCTTCTGTGGATCCGGATCTGTCGTTGGTGGGGACAGTGGGGCTTGGATCTTCTTCATCTTTGTGGTCATTAGCGAATGAGGATGATTACACTGGTAGTTTGTGGGATTATACTGATCCTTTCTTCTTTGATCTTGAGAAAAATTTTTAG 990 0.5111 MASLQPQPQETKPTATTATPSTPSQTSNTSNPPNHTPNNKTSRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAALILYGSRAQLNLQPSGSSSHSSSSRTISSSSTQTLRPLLPRPSGFAFNFPFHAATLPYPCSAAYATTFNYTQQMLCPNENINNTVHVHHHRRPEEVVQVPHAPSPSHQNSESDLSVGGNNTTDDSSIRSTSYQRHGHQDKNRLHVQHGDSSNQQQHQNSVVDEEKSVVGSDESSQVNMEASVDPDLSLVGTVGLGSSSSLWSLANEDDYTGSLWDYTDPFFFDLEKNF* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01602 329 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
Lapu8g01602 329 CDD AP2 57 114 IPR001471 GO:0003700|GO:0006355
Lapu8g01602 329 MobiDBLite consensus disorder prediction 113 136 - -
Lapu8g01602 329 MobiDBLite consensus disorder prediction 45 59 - -
Lapu8g01602 329 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Lapu8g01602 329 Pfam AP2 domain 57 106 IPR001471 GO:0003700|GO:0006355
Lapu8g01602 329 MobiDBLite consensus disorder prediction 203 233 - -
Lapu8g01602 329 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Lapu8g01602 329 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Lapu8g01602 329 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Lapu8g01602 329 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 24 278 - -
Lapu8g01602 329 FunFam Ethylene-responsive transcription factor 2 57 115 - -
Lapu8g01602 329 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Lapu8g01602 329 MobiDBLite consensus disorder prediction 188 283 - -
Lapu8g01602 329 MobiDBLite consensus disorder prediction 248 282 - -
Lapu8g01602 329 MobiDBLite consensus disorder prediction 1 60 - -
Lapu8g01602 329 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01602 Lapu-Chr8 33012096 33013085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01602 43 325 AP2-EREBP Transcription Factor Family AT2G40220 43.974 3.62e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu8g01602 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01602 K09286 - gmx:100779779 338.961