Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01599 ATGAATGATGTTCTATCTGCAATGATGGTTTCCCAATGCTTGTTACCATCTGGATCTTTGCTAGATTCTTTGATTCACATATCCAAAGAAGTTGACTCATTGGAGAAGTTTCCCTTTGTACACATGAGAAACGTTTCATCCATGATAAGGAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTCAAGAAACGGGTACTCCACTTCCTCCTTCTTCTATCCTGTGTCTCACAGAACTCTTCTCTGTGATAAGAAGAGTTAAAGTTTTGATTCAAGACTGCAAGGATGGAAGCTCTCTTTGGAGTCTCTTACAGTTAGAGTTCATTTCCAACCAATTTTATGTGCTAGTAAAGGAGATGGGAAGGGCCCTTGATATCCTTCCCTTGAGTTTGCTTAATGTAACATCAGATATTAAGGAACAAGTGGAGCTTCTCCACAAGCAAGCAAAGAGGGCTGAGTTACTCATTGATCCTAGAGAGCTTCAACGAAGAGAACAACTTAAACAAGCAATGGCCAACAACAGTTTACAAAACAAGAAGAACAAAGGGTTTATTGACTTTAGAAAAGTGGAAGAAATTCTAAGCAGCATTGGTCTGAGAACTCCATCAGATTATGATGGAGAAATATCCAAGTTAGAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGACTAATCATTGTCTCAAATATAAACAACCTCATATCGTTGGTATCTTATTCAAAATCCATGATATTCAGAGATGGAGAGAGTGGTAGAAACGAAGACGATTGTAAGCCACTATCTTCATTTTTGTATAACAAAGTACATGATAGTTGTTCATCCTCTCAGTCCATGACACCTAATGTTCCTGACGAATTTCGTTGTCCAATATCACTTGACTTAATGAGGGACCCCGTGATTGTGTCATCAGGGCACACATATGATAGAACCTCAATTGCACAATGGATAAACTCTGGTCATCACACTTGCCCCAAGAGTGGGCAAAGGCTAATTCACACTGCTCTAATACCCAACTATGCATTGAAGAGCCTTGTTCAGCAGTGGTGCTATGACAACAATGTCCCTGTGAATGAGCCTACGACCGAGGGAAATAACAACAAGAAGAAGAACTCTAAGGAGGAGGCTATCGACCATATTTCTGCAAACAAAGCTGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAAAATTGGCTACTGGTTCTGCTGATATTCAAAGGCAAGCTGCATATGAACTTCGGTTACTTGCAAAAACCGGCATGGTTAACCGAAGTGTCATAGCTGAGGTAGGGGCTATACCCTTTCTTGTAACACTTCTAGGATCTCAAGATTCAAGAATCCAAGAGCATGCAGTGACAACCTTGTTCAACCTCTCGATATTTGACAATAACAAGATTTTGATCACGGCGGCAGGAGCAGTTGATAGCATAGTAGAAGTACTCGAATCAGGGAAGACCATGGAGGCAAGGGAGAATGCAGCAGCATCAATATATAGCTTGTCTATGGTGGATGAGCTCAAAGTGCAAATTGGAGGAAGACCAAGGGCAATACCTGCCTTAGTTGGACTCTTGAAAGAAGGCACTTCAATAGGGAAAAGAGATGCTGCATCTGCACTATTCAATCTTGCAGTTTACAATCCTAACAAGGTTAGTGTTGTTAAGGCTGGGGCAGTTCCTGTGCTGGTTGAGTTGCTGATGGATGACAAGGCTGGCATAACAGATGATGCACTTGCAGTGCTTGCTTTGCTCCTTGGTTGCTCTGAGGGGCTAGAGGAGATAAGAAATAGTAGAGCATTAGTGCCACTTCTTATTGATCTTCTGAGATTTGGTTCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTGCTAGGACTGTGCAAAGAAGAGGGGGAAGTGGTGGCAAGGAGGCTCTTGGCAAATCCAAGAAGCATTCCTTCTCTTCAAAGCTTGGCTGCTGATGGGTCTTTGAGAGCTAGGAGAAAAGCAGATGCACTGCTTAGGTTCCTCAACAGGTGCTGCTCTCAGCCTCATCATTCTGTTTGA 2052 0.423 MNDVLSAMMVSQCLLPSGSLLDSLIHISKEVDSLEKFPFVHMRNVSSMIRRIKLLSSLFEEIQETGTPLPPSSILCLTELFSVIRRVKVLIQDCKDGSSLWSLLQLEFISNQFYVLVKEMGRALDILPLSLLNVTSDIKEQVELLHKQAKRAELLIDPRELQRREQLKQAMANNSLQNKKNKGFIDFRKVEEILSSIGLRTPSDYDGEISKLEAEAQNQAGTGGLIIVSNINNLISLVSYSKSMIFRDGESGRNEDDCKPLSSFLYNKVHDSCSSSQSMTPNVPDEFRCPISLDLMRDPVIVSSGHTYDRTSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYDNNVPVNEPTTEGNNNKKKNSKEEAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMVNRSVIAEVGAIPFLVTLLGSQDSRIQEHAVTTLFNLSIFDNNKILITAAGAVDSIVEVLESGKTMEARENAAASIYSLSMVDELKVQIGGRPRAIPALVGLLKEGTSIGKRDAASALFNLAVYNPNKVSVVKAGAVPVLVELLMDDKAGITDDALAVLALLLGCSEGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRFLNRCCSQPHHSV* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01599 683 SUPERFAMILY RING/U-box 272 357 - -
Lapu8g01599 683 Pfam Armadillo/beta-catenin-like repeat 426 462 IPR000225 GO:0005515
Lapu8g01599 683 Pfam Armadillo/beta-catenin-like repeat 549 584 IPR000225 GO:0005515
Lapu8g01599 683 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Lapu8g01599 683 SMART arm_5 507 547 IPR000225 GO:0005515
Lapu8g01599 683 SMART arm_5 423 463 IPR000225 GO:0005515
Lapu8g01599 683 SMART arm_5 382 421 IPR000225 GO:0005515
Lapu8g01599 683 SMART arm_5 589 630 IPR000225 GO:0005515
Lapu8g01599 683 SMART arm_5 548 588 IPR000225 GO:0005515
Lapu8g01599 683 SMART arm_5 464 505 IPR000225 GO:0005515
Lapu8g01599 683 CDD RING-Ubox_PUB 284 336 IPR045210 -
Lapu8g01599 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Lapu8g01599 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 357 IPR013083 -
Lapu8g01599 683 Pfam U-box domain 283 353 IPR003613 GO:0004842|GO:0016567
Lapu8g01599 683 FunFam RING-type E3 ubiquitin transferase 489 676 - -
Lapu8g01599 683 SUPERFAMILY ARM repeat 394 672 IPR016024 -
Lapu8g01599 683 Gene3D - 365 511 IPR011989 -
Lapu8g01599 683 PANTHER U BOX DOMAIN-CONTAINING 42 675 - -
Lapu8g01599 683 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Lapu8g01599 683 FunFam RING-type E3 ubiquitin transferase 282 356 - -
Lapu8g01599 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Lapu8g01599 683 Gene3D - 512 671 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01599 Lapu-Chr8 32978017 32980068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01599 18 678 U-box Gene Family AT3G46510 37.481 1.19e-127 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01599 - - gmx:100793498 1159.44