Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01586 ATGAGCAACCCTCTCCATAAGTGCCGCAGCTACTCCTTCTGTTTCTTCAGTTTAGTGCCGAAGCAGTGGAGCACTAGTTTCCTTTGCAATTCCAAAATGGCTAGGGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTGCACCCAAACCCTCATCAGGGCCCCACAAATCGAGGGAGTGTCTCCCCCTCATACTCATCCTGCGAAACCGGTTGAAGTATGCTCTTACCTACCGTGAAGTCATTGCTATTCTAATGCAGCGACATGTTCTTGTCGATGGCAAAGTCAGGACAGACAAGACATACCCTTCTGGTTTCATGGATGTTGTATCCATCCCTAAAACTAACGAGAACTTCCGCCTGCTCTATGACACCAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGACAGAAAGGCATTCCATACCTGAACACCTATGATGGTCGTACCATCCGTTACCCAGACCCTGTCATCAGAGCCAATGACACCATTAAGCTGGATCTTGAGGAAAACAAGATCGTTGATTATATCAAATTTGATGTTGGGAATGTTGTTATGGTTACTGGAGGAAGGAACAGGGGGCGTGTTGGAGTGATCAAGAACAGGGAGAAGCATAAGGGTAGCTTTGAGACAATTCACGTTCAGGACGCCACCGGACATGAATTTGCTACTCGTTTGGGAAACGTGTTCACTATTGGCAAGGGTACAAAGCCATGGGTATCACTTCCCAAGGGTAAGGGTATTAAGCTATCCATCATTGAGGAAGCTAGAAAAAGGATTGCCGCTCAGCAAGCGACTGCTGCGTAA 891 0.4725 MSNPLHKCRSYSFCFFSLVPKQWSTSFLCNSKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDYIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRIAAQQATAA* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01586 296 CDD S4 83 144 - -
Lapu8g01586 296 Hamap 30S ribosomal protein S4e [rps4e]. 39 270 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lapu8g01586 296 SMART s4_6 74 138 IPR002942 GO:0003723
Lapu8g01586 296 FunFam 40S ribosomal protein S4 207 277 - -
Lapu8g01586 296 Gene3D - 154 203 IPR038237 -
Lapu8g01586 296 Pfam KOW motif 209 242 IPR005824 -
Lapu8g01586 296 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 33 286 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lapu8g01586 296 PIRSF RPS4a_RPS4e 33 273 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lapu8g01586 296 Gene3D - 33 149 IPR036986 GO:0003723
Lapu8g01586 296 Gene3D - 207 277 IPR014722 -
Lapu8g01586 296 Pfam 40S ribosomal protein S4 C-terminus 244 290 IPR032277 -
Lapu8g01586 296 ProSiteProfiles S4 RNA-binding domain profile. 74 136 - -
Lapu8g01586 296 Pfam Ribosomal family S4e 127 201 IPR013845 -
Lapu8g01586 296 FunFam 40S ribosomal protein S4 154 204 - -
Lapu8g01586 296 Pfam RS4NT (NUC023) domain 35 71 IPR013843 -
Lapu8g01586 296 Pfam S4 domain 79 122 IPR002942 GO:0003723
Lapu8g01586 296 CDD KOW_RPS4 207 261 IPR041982 -
Lapu8g01586 296 SMART kow_9 206 233 IPR005824 -
Lapu8g01586 296 FunFam 40S ribosomal protein S4 33 149 - -
Lapu8g01586 296 ProSitePatterns Ribosomal protein S4e signature. 40 54 IPR018199 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01586 Lapu-Chr8 32900964 32903900 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01586 33 294 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.221 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01586 K02987 - gmx:100795220 506.138