Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01580 ATGGCGCACAGAAAAAGGCGATTAGATCAAATCAAGCATCCATTCAATTCTCACCCTTTTGAAGCAGTTGTCTCAGGCTCATGGCAAGCTGTGGAGTTCATAAAGATTGAGACAGGAACTTTGTCCATGCATTTTGTAGATAATCATTATAAGACTATGGAGAAAGGACCCCTGTCAGACATTCGGATAAGGTCAAAGAAAGCTACTTTATCTGATTGTTCCCGTTTTCTGCGTCCTGGAATTGACATATGTGTGTTATCTGCCCCTCAACAATCTAATGACTCAGATGCAATTGTTATTGACCCTGTTTGGACTGATGCTAAAATAAGCTCTGTACAGAGAAGACCTCATGACTCTGAATGCTCGTGTCAGTTTTATGTCAACTTCTATGTTCATCAAGGTTCACTTGGTGCAGAGCTAAGAACTCTTAGCAAGGAGATTAAAGTAGTTGGAATCAAACAAATATCCATCCTTCAGAAACTTGAAAATATTCCTTGTGAAGATCAGCACTACCGATGGGCATCATCCGAGGACTGTTCCATTATATCACACACTAAATTGCTTCTGGGAAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTGCCTCAGCTTTAAAGAAGATTTCATTTTGTGTAAGATCTCTAGAAGAGAAGCTAGTGTATCAAATTTTGGGAAGGGATACTCTTAACACTTCATTGAACAAAGAGTCTCACATTGATGTTGTGAATTTCAAAACAGAAAGTGGCATGTTAGTACCCTTTGTTTCTCAAGTAGCTACACCTATAACTAAGAGGATTGATCATGTACAGGAACCCGACGAAGATAAAGTATCACAATCTTACAATGTTGAGGGCTTGCGGCGATCCAAGCGTCGGAATGTACAACCAGAGCGTTACCTTGGTTGCGATAATGTTGCTTCAGAGATTGATGTTGGTTCTTTCAGAAACAGACCACCAGTGAAGATAGACATATGGAAAGATGACGATGACGATGAACTGCATATACCATTAGCATGTCTGTTTGGTTTGCAGAAGAACTCTCTGGAAGGGGTTACTGAGAATCATCAACAGGTCAAGAAGGCAAGTACCTGCCGGGAGCTTGTGATGTATAAGAGGAGGATGGCTAAAACTCAGGAGGTAAAGTCAGGAGAAAATGATGATCAGAATAAAGATAAAAATCGACTTGCTATTATTCCTCTTCCTGATCAAGATGATCCTCTACTTGTAGAGCATTGTGATGATTTAGATGACAAGGTTACTAGAAGTTATGGTCATGAATCCCCTGAACATTATTCCAAATATTATCATCTAAGTAGTACCCCTAATAAATCAAAGAAGAAAGATGATAAATTGTTAGCTTTTGAGCCTTATAACCATCCTGCAAACTCAGAAGATGTAGAAAAGAGTGATGATTTGTCATTGAGATATCATTATAGTTATGGTGCCCCTAAGTCACAGAGGAAGGGTTTATGTGATTTGGATGATATGGTGGATCTTGGAAATAAATGGGAAGGGATTAGATCCAATAAAGGAGTTCAAAACAAAAAATATCATGCAGCATATTCAGGAAGTAGAGATCATGGAGAAGAAAAAAGATACAACTATAAAGACAGAACCTTAAATGCAGCTGCCTTCAAGGATATGATAAATTCGTACTTAAAGAATATTAATACAAGACCTACTCAAGAAGAACCATCTATCACTGACCAGTGGAAGCAAAACGACACAACTAGTAGCATTGGGCAAAAGAGGGAAACGGAAATGCTTGATGAAGAGGATGCAGAAGAAGTATCTGAAATGGATATGTTGTGGAGAGAACTGGAAGTGTCATTGGCGTCATGCTATCTAGAAGAGGACTCAAATGCCGCTATTATCACTGAGACTGTGGAAAAGCCGAATGAAGGCTGTCCACATGATTTCAGAATGAATGAAGAAATTGGAATTTACTGCTATAGATGTGGCTTTGTGAGCACCGAAATCAAATATATTACGCCACCCTTTATTCAACATTCAGTGTGGCACCAAGAGGAGAAGCACAGTGCTGAAGATTCACGAACCAAGGTTGACGAGGATGATGACTTGGATCTTTTCCCCGCCCTGGATTCTCCTGAGAGACCTGTGTCTCTAGAAAATGATAATGTTTGGGCATTGATTCCCAAACTTAGAACAAAGTTGCATGCTCATCAGAAGAAAGCCTTTGAGTTTCTTTGGCAAAACATTGCAGGTTCCATGGAACCCAGACTTATGGAAGCAACATCCAAAGGAATAGGTGGCTGTGTGGTATCTCATACTCCAGGTGCTGGAAAAACTTTTCTCATCATTGCTTTTCTTGTGAGCTACTTGAAGTTATTCCCAGGGAAGAAACCTCTGGTCCTTGCTCCAAAAACAACACTCTATACTTGGTACAAAGAATTTATTAAGTGGGATATTCCTATACCAGTGTATCTAATTCATGGTCGTAGAACATACCGGGTATTCAAGCAGAAATCAACTATTGTTATTCCTGGAGTTCCCAAGCCCACTGATGATGTCAAACATGTCTTAGATTGCCTTGAGAAGATACAAAAATGGCATTCACACCCCAGTGTTCTAATCATGGGTTATACTTCATTCTTAACATTGATGCGTGAGGATTCAAAGTTTGCACACAGAAAATACATGGCTAAAGTATTGAGGGAAAGCCCTGGGATCATGGTACTAGATGAAGGACACAATCCCAGAAGCACTAAATCAAGGTTGAGAAAGGTTTTGATGAAAGTACAGACAAAATTGAGAATATTGCTTTCTGGTACATTGTTTCAGAACAACTTCTGTGAATACTTCAATACATTGTGTTTGGCAAGACCAAAGTTTATTCACGAAGTACTGAAAGCATTAGACCCTAAATACAGGAGAAAAGGGAAAGTGGCAAAAAAGGCAATTCATTTATTAGAGTCACGGGCTAGAAAATTCTTCTTAGACAAAATTGCTAAGAAGATTGACTCTGATAAAGGTAGGGAGAGACAGCAGGGTCTAAAGATGTTGAGAAATGTGACAAATGGTTTCATAGATGTTTATGAAGGTGGGAGTTCTGACGGTCTACCTGGTTTACAAATTTATACATTGTTAATGAATTCAACCGATACACAACATGAGATTTTGCTTAAACTGCACAAGAGAATGGCCCAGTGCAATGGTTACCCTCTGGAATTAGAGCTTTTGATAACTCTTGGTTCAATACATCCCTGGCTGGTCAAATCAGCAGTATGTGCTGAGAAGTTTTTCACTTCTGAGCAACTGATGGAGCTAGAGAAATGCAAATTTGATCTAAAAATGGGATCCAAAGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTAAAAAAGGAGAAGGTTCTTATCTTTTGCCACAATATTGCACCTGTTAAGTTATTTCTGGAATATTTTGAGAAGTACTTTGGGTGGATAAGAGGTAAGGAAGTGTTGGTACTAACTGGGGAATTAGAGCTCTTTGAAAGGGGGAGAGTGATGGATAAGTTTGAGGAACCTGGTGGAGTATCAAAGATACTCCTTGCTTCTATTACAGCTTGTGCTGAAGGCATTAGTTTGACAGCGGCTTCTCGAGTTATTATGTTGGACTCAGAGTGGAACCCTTCAAAAACAAAGCAGGCCATTGCTCGGGCCTTTCGCCCTGGTCAGCAGAAAGTTGTTTATGTGTATCAGCTCTTGGTGACAGGTTCATTGGAAGAAGATAAGTACAGAAGAACCACTTGGAAAGAATGGGTGTCAAGCATGATCTTCAGTGAGGACTTTGTGGAGGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGGGAAATGGTTGCCGAGGACAGGTCTAAATCATTCCATATGATCATGAAGAATGAAAAAGCTTCTTCTATCAACAAATAA 3924 0.3953 MAHRKRRLDQIKHPFNSHPFEAVVSGSWQAVEFIKIETGTLSMHFVDNHYKTMEKGPLSDIRIRSKKATLSDCSRFLRPGIDICVLSAPQQSNDSDAIVIDPVWTDAKISSVQRRPHDSECSCQFYVNFYVHQGSLGAELRTLSKEIKVVGIKQISILQKLENIPCEDQHYRWASSEDCSIISHTKLLLGKVLCDLSWLVVASALKKISFCVRSLEEKLVYQILGRDTLNTSLNKESHIDVVNFKTESGMLVPFVSQVATPITKRIDHVQEPDEDKVSQSYNVEGLRRSKRRNVQPERYLGCDNVASEIDVGSFRNRPPVKIDIWKDDDDDELHIPLACLFGLQKNSLEGVTENHQQVKKASTCRELVMYKRRMAKTQEVKSGENDDQNKDKNRLAIIPLPDQDDPLLVEHCDDLDDKVTRSYGHESPEHYSKYYHLSSTPNKSKKKDDKLLAFEPYNHPANSEDVEKSDDLSLRYHYSYGAPKSQRKGLCDLDDMVDLGNKWEGIRSNKGVQNKKYHAAYSGSRDHGEEKRYNYKDRTLNAAAFKDMINSYLKNINTRPTQEEPSITDQWKQNDTTSSIGQKRETEMLDEEDAEEVSEMDMLWRELEVSLASCYLEEDSNAAIITETVEKPNEGCPHDFRMNEEIGIYCYRCGFVSTEIKYITPPFIQHSVWHQEEKHSAEDSRTKVDEDDDLDLFPALDSPERPVSLENDNVWALIPKLRTKLHAHQKKAFEFLWQNIAGSMEPRLMEATSKGIGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKKPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSTIVIPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVQTKLRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDPKYRRKGKVAKKAIHLLESRARKFFLDKIAKKIDSDKGRERQQGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILLKLHKRMAQCNGYPLELELLITLGSIHPWLVKSAVCAEKFFTSEQLMELEKCKFDLKMGSKVRFVLSLIYRVVKKEKVLIFCHNIAPVKLFLEYFEKYFGWIRGKEVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEDFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASSINK* 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01580 1307 CDD SF2_C_SNF 1100 1236 - -
Lapu8g01580 1307 MobiDBLite consensus disorder prediction 375 394 - -
Lapu8g01580 1307 SMART helicmild6 1140 1225 IPR001650 -
Lapu8g01580 1307 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 750 950 IPR014001 -
Lapu8g01580 1307 Gene3D - 1080 1299 IPR027417 -
Lapu8g01580 1307 Pfam Helicase conserved C-terminal domain 1108 1224 IPR001650 -
Lapu8g01580 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 709 964 IPR027417 -
Lapu8g01580 1307 MobiDBLite consensus disorder prediction 560 594 - -
Lapu8g01580 1307 MobiDBLite consensus disorder prediction 375 393 - -
Lapu8g01580 1307 CDD DEXHc_ATRX-like 725 955 - -
Lapu8g01580 1307 Gene3D - 704 987 IPR038718 -
Lapu8g01580 1307 Pfam SNF2-related domain 731 993 IPR000330 GO:0005524|GO:0140658
Lapu8g01580 1307 SMART ultradead3 721 955 IPR014001 -
Lapu8g01580 1307 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1112 1272 IPR001650 -
Lapu8g01580 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1026 1286 IPR027417 -
Lapu8g01580 1307 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 52 1304 IPR044567 GO:0080188
Lapu8g01580 1307 MobiDBLite consensus disorder prediction 560 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01580 Lapu-Chr8 32840042 32847473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01580 1104 1243 RAD5 or RAD16-like Gene Family AT5G43530 34.965 1.64e-11 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu8g01580 SNF2_N 1.9e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01580 K10875 - gmx:100811703 2232.6