Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01579 ATGGGTGTTTATGATCAAGTTTCTCTGCGGCCTTTGGATTCTTCTAGAAAGAGGAAAAGTAGGAGCAGAGGGGATGGTTCTAGATCTGTGGCTGAGACTATTGCAAAGTGGAAGGAATACAATGAGCATCTTTACTCTGGAAAAGCTGATGGTAGATCAACTCGTAAGGCACCAGCTAAAGGTTCAAAGAAAGGATGCATGAAAGGGAAAGGAGGACCACAGAACTACCAGTGTAACTACAGAGGAGTTAGGCAGAGAACTTGGGGGAAATGGGTGGGTGAGATTAGGGAGCCAAATAGAGGGAGTAGGCTTTGGTTAGGAACCTTTTCTACTGCCCAAGAAGCTGCTCTTGCCTATGATGAAGCTGCTAGAGCCATGTATGGTCCATGTGCACGCCTCAACTTCCCCAACATCTCAGATTATGCTTCTGTCAAGGAATCGTTTAGGGACTCTTCTTTGGCTGCATCATCTTCATGTTCTTCGGCAGCATCGAACACTACTACCACATCCAATCGATCCGAGGTTTGTGCAGCTGAGGATGCTAAGGGGAATACTCTACCTGTCCTTGATAAGTTCCATGATAATGATTGTCACAAAGCTTACGAATATGCCTCACCAACTAGCAGAATGAAGCTAGAGCCTAAGGATGAGGCTATGGATCACTCAGACCCGGGGGCTGCAGAAGGAATACATCATACTGGGCAGGTTGCGGAGGATGTAAATAAAGATCAGATGGACTTTTCATGGATTGATGCTTTCGATTTTAATGATGATTACACGAAGAGCTTTTCCAATGATGAGTTATTTCAGGTGGATGAACTTTTGGGGCTTATAGAGAATAACCCAGTTGATGACTCTGGGTTGATGCAAGGTTTGGATTTTGGACAAATGGGATTTCCTGGAGAAAATAATCCTCAGGTCGATAATACGTCTTCAAGCTTTTTCTATCAGTTGCAAAATCCAGATGCGAAGTTGTTGGGAAGTTTGCCCCATATGGAGCAGACACCATCAGGTGTTGATTATGGATTAGATTTCTTGAAAACAGTTGTGCCAGAGGACTATAATGGTGGAGGGGAAGAACCAGAATTTCTTAATTTGGATGATGTTCTGAACCATGACTCAAAGGGAATACAAGAAAGCAAGGAATGA 1149 0.4378 MGVYDQVSLRPLDSSRKRKSRSRGDGSRSVAETIAKWKEYNEHLYSGKADGRSTRKAPAKGSKKGCMKGKGGPQNYQCNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPNISDYASVKESFRDSSLAASSSCSSAASNTTTTSNRSEVCAAEDAKGNTLPVLDKFHDNDCHKAYEYASPTSRMKLEPKDEAMDHSDPGAAEGIHHTGQVAEDVNKDQMDFSWIDAFDFNDDYTKSFSNDELFQVDELLGLIENNPVDDSGLMQGLDFGQMGFPGENNPQVDNTSSSFFYQLQNPDAKLLGSLPHMEQTPSGVDYGLDFLKTVVPEDYNGGGEEPEFLNLDDVLNHDSKGIQESKE* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01579 382 CDD AP2 78 137 IPR001471 GO:0003700|GO:0006355
Lapu8g01579 382 MobiDBLite consensus disorder prediction 48 71 - -
Lapu8g01579 382 MobiDBLite consensus disorder prediction 1 31 - -
Lapu8g01579 382 FunFam Ethylene-responsive transcription factor 2 78 137 - -
Lapu8g01579 382 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
Lapu8g01579 382 SUPERFAMILY DNA-binding domain 79 136 IPR016177 GO:0003677
Lapu8g01579 382 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Lapu8g01579 382 MobiDBLite consensus disorder prediction 11 26 - -
Lapu8g01579 382 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Lapu8g01579 382 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Lapu8g01579 382 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Lapu8g01579 382 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Lapu8g01579 382 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01579 Lapu-Chr8 32829268 32831855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01579 16 367 AP2-EREBP Transcription Factor Family AT2G40340 41.341 1.59e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu8g01579 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01579 - K09286 gmx:100800134 575.089