Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01575 ATGACTACTACAGCCAAGAAGTACTTCTTCAAAGTCTTCTTTCCAGATAAACACTATGAAAGAATGGTTATCCCAAGTGCTTTTGTGAAGTCTACACTACGAAGGAGAATCCCTGAAGATGTCATCCTCAGAAATGTTAGTGGGAGGGTTTGGTGTGTCAAAACTCGTCTCGTTGGACGCAAAATCTACTTTCAAGAGGGCTGGAAGGTTTTTCAAGCAGAAAACTGTATAAGAAAATCAGATTTTCTACTTTTTAAGTATGATGGGACCAATGTATTCAAGGTGGTAATTCTTGAACAATCATCACGGTGTGAAAGGAGAGAAGTTGAAGAAGATGAGGTGATAAATATTACAGAAGAGGAAGAGAATGAAAAGGCTGAGGACTCTATGATGGAGGACGAGGAAGACAATGATGATGAGGATGACTATTATGAAGATGACGATGGCAATTATACAGAAATAGAAGAGAGTGAAGAAGAACACATGAGTAGTCAAAATCATCATAGGGATAGTGCACCAAGTTCCATGCAAGGTCCTCATCTTGAAGACTATGAATTTGATCCACAAATGTATATTCAACCGGAAAATCCATACTTTGAAGCAAAACTGTATAAAAATAGACCCAACGAATTGCATGTTCCAGCAAATATTATCAGAGACTCGTCCCTTACTTTTCCAGAAGAGATCACCCTTTCACGTTGCCAATGCTTCCAACGTGAGGATATTCAAAGAAATGAATTTCGAGACAGTCATTTCGGCTTGTCACGACATACACCAATCTATTCAGAAGTAAAAAAAGTGTCTGAGTGGCAAGATGGTCGAGTATGCATTAAAGGGTGGACAAGCTTTTGTACAAAGAATAAGATCAAAGAAAATGATGTATGCATATGTGAAATTGTACCAGGGAAAGACAGAGTAGTAAGAGCACTTCAGGTGCATGTGCTTGGTGCTAGGAACGGATGA 963 0.3894 MTTTAKKYFFKVFFPDKHYERMVIPSAFVKSTLRRRIPEDVILRNVSGRVWCVKTRLVGRKIYFQEGWKVFQAENCIRKSDFLLFKYDGTNVFKVVILEQSSRCERREVEEDEVINITEEEENEKAEDSMMEDEEDNDDEDDYYEDDDGNYTEIEESEEEHMSSQNHHRDSAPSSMQGPHLEDYEFDPQMYIQPENPYFEAKLYKNRPNELHVPANIIRDSSLTFPEEITLSRCQCFQREDIQRNEFRDSHFGLSRHTPIYSEVKKVSEWQDGRVCIKGWTSFCTKNKIKENDVCICEIVPGKDRVVRALQVHVLGARNG* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01575 320 Gene3D - 185 318 IPR015300 -
Lapu8g01575 320 Pfam B3 DNA binding domain 9 97 IPR003340 GO:0003677
Lapu8g01575 320 SMART B3_2 9 101 IPR003340 GO:0003677
Lapu8g01575 320 MobiDBLite consensus disorder prediction 115 155 - -
Lapu8g01575 320 SUPERFAMILY DNA-binding pseudobarrel domain 267 312 IPR015300 -
Lapu8g01575 320 Coils Coil 107 136 - -
Lapu8g01575 320 Gene3D - 1 104 IPR015300 -
Lapu8g01575 320 ProSiteProfiles B3 DNA-binding domain profile. 7 101 IPR003340 GO:0003677
Lapu8g01575 320 SUPERFAMILY DNA-binding pseudobarrel domain 6 100 IPR015300 -
Lapu8g01575 320 CDD B3_DNA 7 98 IPR003340 GO:0003677
Lapu8g01575 320 PANTHER B3 DOMAIN-CONTAINING 4 304 - -
Lapu8g01575 320 MobiDBLite consensus disorder prediction 115 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01575 Lapu-Chr8 32796940 32798702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01575 9 315 B3 DNA Binding Superfamily AT3G06160 27.914 2.82e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu8g01575 B3 7.8e-14 CL0405