Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01536 ATGATTTCGCAGTTGATTTCAAATGGCTTCTTTCTTTCCCACCGCACCATGCTTGCAAAACCCCTTCCACAACAAACCCCATCTTTCATTTCCCTCAAAGTTCGATGCTTTCGCGCTTGTGAGCCAATCCCAGTTCCTGATTTTTCTCCTCCGAATTCCCTTCTCTCGCCGCGTTCCCTCAAACGGGTCTCTCGCGTCTTGAGGACCGAGCTTCAACGCGCTCTAATGGATTACCTGCATTTCACGCGCGGCTACACTTTCTCCGATGCTGAGTACATCAGCAAGAACTCGCCTCGTTTTGTTGAATCATTAGTGTCTATGATTGACGACAAAGACGACGTTCCCCGATCGTTGCGGAAGTTATTCAGGTACAACCCCATTAACGAGTTTGAGCCGTTTTTTGAGAGTTTGGGAATTGGCCCTTCTGAGTTGCATTTGTTTCTCCCCCATGGCATGATTTTCTTGGCTGATGATCACGTGCTGCTTCATAATTTTCATGTTTTGTGTAATTATGGGGTGCCAAGGAATAGAATGGGGAGGTTCTATAAAGAGGCAAAAGATATTTTTGGGTATTCTAGTGGGTTGTTGGAGTCAAAGTTGCAAGGCTATGAGAATTTGGGTTTGAGTAGATCAACAGTCGTGAAACTTGTTGTTTGCTGTCCTTTGCTTTTGGTTGGTGATGTCAATTGTGAATTTGTTGCTGTGCTTGATTGGTTGAAGAGAATTGGGATTGAAAGTGATTGGATAGTGAATTACTTGTCTTGTTCAAGGACATATAGTTGGAAAAGAATGCTTCATACCTTGCAGTTTCTTCATAAAGTGGGTTATTCTGAGGAACGAATCCACAATTTGTTTAGGGGAAATCCTAAACTGTTGTTGGAAGGTATTGGGAAGAAGGTGTACTTATTTTTTGGTCAATTGGTTAAAGTTGGTGTTGAGATGAATGTGGTTTATTCTTATTTTGTGGAGTATCCCAATATCTTGTCTTACAAGTGTGCGAAAAATATGTTGAGAGTGATTGGCTTTTTGTGTGCTATTGGAATGGGAAAAGATGACATTGCTCACATTTTCTCTAAGTACATGCATCTCTTGAGTACATGTTCCTTGAAAGGTCATAAAACTGTTTGCCAGGAGTTAAAAGTTGGAAAAGCTGATTTGTGCCAAATCATAAAGGATGATCCATTGAAGCTAATAAGTTTTGCATCAAAGCACCAGCAGAAGAGCAATGGAAAGGTTGATAGTCATGACCCACGGAATTATTTGGAAAAAACAACTTTCTTGCTGAAATTGGGATATACTGAGAACTCTGAAGAGATGGCAAGAGCATTAAGAATGTTCCGTGGGAGAGGTGATCAATTACAAGAGAGGTTTGATTGCCTGGTGGAAGCTGGTTTAGACTATAATAGTGTGATTGAAATGATAAAACGAGCTCCTATGATTCTAAGCCAGAACAAAGCTGTAATTAAAAGGAAGATTGATTTCTTAAGAAATGTTTTAGATTACCCACTAGAATGTCTCGTGGGATTCCCAACATACTTTTGCCATGATTTGGACAAAATTGTTGAAAGACTTTCAATGTATGCATGGCTGAAGGAGAGGAATGCCATTAATCCTACGTTAACCTTGAGTACCATAGTTGCATCCAATGATAAACGCTTTGTAAAGTACTTTGTGAATGTGCATCCTCAAGGTCCAGCCGTCTGGAAGGGTTTAAAAAGTTTGAAAAGTAACCTGGGGGGGAAAGTGCAGGATGTGCTGTTAGATTACTTGCATTCGAGCAGGGGATACAGCTTCGTGGATGCTGAATTCATAAGCAAAAACTCACCATCTTTTGTTCAAGGTTTGGTGTCAGAGTTTCACGGACAAGATGATGATGTTGCCACGTGCTTGAGGAAGTGGCTGTGGTACAACCCCATTAACGAGTTTGAACCATTCTTTGAGAGTTTGGGGATTAGCCCGCGTGAGTTGCCTTTGTTTCTCCCGCGTGGTATGATGTATTTGTCTGATGATCATGTTTTGCTTGCCAATTTCCACGCTTTGAGTAACTATGGAGTTCCAAGGAATAGGGTAGGGAAAATTTATCGAGAGGCAAAGGAGGTTTTTGGGTATCCTAATGGATTGTTGTTGTCGAAATTTCGAGGTTATGAAAATTTGGTGGGCTATTCTGAAGAACAGATGCACAATTTCTTCAAGGAAAACCCTGCATTATTACTGGAAGGTCTTGAGAAGGAGGTGTGTGTATTTTTGGGTCTAGCATTTAAGTTAGGTCTCGATAAGAACGTGATTTTTTCTTGTTTTGTAGAATATCCCCATATCTTGACTAATAAGTGTGCAAAAAATCTTTTGGGAGTGATTGGTTTTTTGCGGTATGTCGGAATGGATATAGATGACATTTCGCACATTTTGTCTAACTACATGCATCTCCTGAGCTCACATCCCTTGAAAGGCCCTAAAGTTGTTTGTTTGCAGTTAAAACTTAGAAAAGCTGATCTATGCCAAATCATAAAGGATGATCCACTGAAGCTAATTAGTTTGGCTTCAAAACTGAAACAGAATACTGATTTACAGTTATTGCGTGATGAACCAAGTAAACATTTAGGGAAAACAACATTCTTACTGAAGTTGGGATATGCTGAGAACTCTGAGGAGATGGCAAAAGCAATAAAAAGATTCCGAGGGAGAGGTGATCAGTTACAAGAGAGGTTTGATTGCCTAGTTGAAGCTGGTTTGGACTATAACATTGCAATTAAAATGATAAAATCTGCTCCTATGATTCTAAACCAGAACAAGGTTGTGATTCAAAAGAAGATTGATTTCTTAAGAAACATTTTAGGTTACCCATTAGATTGCATCGTGGCATTTCCAGCATATTTATGCTATGATTTAGAGAGAATCATGCTCAGATTTTCAATGTATGCTTGGGTGGCGGAAAGGAAAGCAGCAAAACCTATGATGGCCTTGAGCACTATCCTTGCATCCTCTGATGAAAAGTTTGTAAAATACATTGTGAATGCACATCCTGAAGGTCCAATCATTTGGGAAGGTCTAAAGAAGTTATTGCTAAAAGATAAGAGCCAACTCTTCCTTTAA 3090 0.399 MISQLISNGFFLSHRTMLAKPLPQQTPSFISLKVRCFRACEPIPVPDFSPPNSLLSPRSLKRVSRVLRTELQRALMDYLHFTRGYTFSDAEYISKNSPRFVESLVSMIDDKDDVPRSLRKLFRYNPINEFEPFFESLGIGPSELHLFLPHGMIFLADDHVLLHNFHVLCNYGVPRNRMGRFYKEAKDIFGYSSGLLESKLQGYENLGLSRSTVVKLVVCCPLLLVGDVNCEFVAVLDWLKRIGIESDWIVNYLSCSRTYSWKRMLHTLQFLHKVGYSEERIHNLFRGNPKLLLEGIGKKVYLFFGQLVKVGVEMNVVYSYFVEYPNILSYKCAKNMLRVIGFLCAIGMGKDDIAHIFSKYMHLLSTCSLKGHKTVCQELKVGKADLCQIIKDDPLKLISFASKHQQKSNGKVDSHDPRNYLEKTTFLLKLGYTENSEEMARALRMFRGRGDQLQERFDCLVEAGLDYNSVIEMIKRAPMILSQNKAVIKRKIDFLRNVLDYPLECLVGFPTYFCHDLDKIVERLSMYAWLKERNAINPTLTLSTIVASNDKRFVKYFVNVHPQGPAVWKGLKSLKSNLGGKVQDVLLDYLHSSRGYSFVDAEFISKNSPSFVQGLVSEFHGQDDDVATCLRKWLWYNPINEFEPFFESLGISPRELPLFLPRGMMYLSDDHVLLANFHALSNYGVPRNRVGKIYREAKEVFGYPNGLLLSKFRGYENLVGYSEEQMHNFFKENPALLLEGLEKEVCVFLGLAFKLGLDKNVIFSCFVEYPHILTNKCAKNLLGVIGFLRYVGMDIDDISHILSNYMHLLSSHPLKGPKVVCLQLKLRKADLCQIIKDDPLKLISLASKLKQNTDLQLLRDEPSKHLGKTTFLLKLGYAENSEEMAKAIKRFRGRGDQLQERFDCLVEAGLDYNIAIKMIKSAPMILNQNKVVIQKKIDFLRNILGYPLDCIVAFPAYLCYDLERIMLRFSMYAWVAERKAAKPMMALSTILASSDEKFVKYIVNAHPEGPIIWEGLKKLLLKDKSQLFL* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01536 1029 FunFam mTERF family protein 107 258 - -
Lapu8g01536 1029 PANTHER CGI-12 PROTEIN-RELATED 71 330 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 Gene3D Transcription termination factor 3, mitochondrial 748 1009 IPR038538 -
Lapu8g01536 1029 Gene3D Transcription termination factor 3, mitochondrial 102 233 IPR038538 -
Lapu8g01536 1029 Gene3D Transcription termination factor 3, mitochondrial 299 569 IPR038538 -
Lapu8g01536 1029 FunFam Transcription termination factor MTEF18, mitochondrial 303 571 - -
Lapu8g01536 1029 SMART mt_12 471 502 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 SMART mt_12 214 245 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 SMART mt_12 319 349 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 SMART mt_12 948 979 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 SMART mt_12 763 794 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 SMART mt_12 916 947 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 SMART mt_12 436 466 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 SMART mt_12 503 534 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 SMART mt_12 179 209 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 Pfam mTERF 450 553 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 Pfam mTERF 248 364 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 Pfam mTERF 897 998 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 Pfam mTERF 268 484 IPR003690 GO:0003690|GO:0006355
Lapu8g01536 1029 Pfam mTERF 719 852 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01536 Lapu-Chr8 32481866 32489036 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu8g01536 mTERF 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01536 - - gmx:100803162 969.918