Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01529 ATGCCAGAAAACAGGCAGGTTCTGAGGAATGCTGATTCTACACCTTCCGGTGACAACATTGAAGGTGGTGCAGATTTTTCTGAAGCTATTCGTCGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCTATCTACCCAATATCCAGATCGACCCGGTGAACCTGATTGCTTGTACTATTTGAGGACTGGAATGTGTGGCTATGGGAGTAACTGCCGCTACCATCACCCTGCTCATATTTCAATTGCTACTCATTATGGTGAAGAACTCCCTCAGAGGACCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCCACATGTAAATACCATCATCCAAAGGACAGGCGTGGTGCTGCTCCTGTGTCATTCAATACTTTAGGTCTTCCAATGCGTCAGGAAGAAAAATCATGTCCCTTTTACATGAGAACCGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGCATGCTTCCCTTGGAGCATATCCCTTGGCCGGATCTCCTACCTCAACAATTATTCCTACATCAGGTTTACCATATGCTGGAGGCTTTCCTGCATGGTCCGCAGTACCAAGAATGTCATATTTATCTGGGCAAGGCGTTCAATCTTATGTGCCTCCTTTTCTGTCTTCTTCTCAAGGCATTATACCCGTGCAGAGCTGGAACAACTACATGGGAAGCATGAACCCAACAATGCCTACTGGTTATCTTGGATCTAATCTTGTTTATGACTTCATGAATCTGGGGGAGTCACTTTTCCGTGGGCAGGCGATAAATTCAGCTCTCCCAAATCGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAGGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTACTACAGAATCTATGGAATGTGCAAATTTGGTCCAACATGCAAATTTGATCATCCAGTTTTGACCATCCCTCAGAACTATGGCTTGACCTCACCTGCTCTATCTGCACTTGATGCTCCTCTCATTAGTAACCAAAGAGGGTTGTCAAGTGTACAACCACCCGAGACATCTCCTTCTAAATTATCAGGCGACAACAAGCTTCAGCACTCTGATGCAAAAGCTGCCACAGAAGATTCATCCAAACAAGCCGATAATACTACACCAAATTCCTTCCCAGCCTCCTCAGAGCCTTTACATGACTAA 1284 0.4455 MPENRQVLRNADSTPSGDNIEGGADFSEAIRRLKINDNWDRDAAALSTQYPDRPGEPDCLYYLRTGMCGYGSNCRYHHPAHISIATHYGEELPQRTGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPFYMRTGSCKFGVACKFHHPQHASLGAYPLAGSPTSTIIPTSGLPYAGGFPAWSAVPRMSYLSGQGVQSYVPPFLSSSQGIIPVQSWNNYMGSMNPTMPTGYLGSNLVYDFMNLGESLFRGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERISQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPALSALDAPLISNQRGLSSVQPPETSPSKLSGDNKLQHSDAKAATEDSSKQADNTTPNSFPASSEPLHD* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01529 427 Gene3D - 271 349 - -
Lapu8g01529 427 SUPERFAMILY CCCH zinc finger 99 124 IPR036855 GO:0046872
Lapu8g01529 427 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Lapu8g01529 427 SUPERFAMILY CCCH zinc finger 318 346 IPR036855 GO:0046872
Lapu8g01529 427 MobiDBLite consensus disorder prediction 406 421 - -
Lapu8g01529 427 SUPERFAMILY CCCH zinc finger 58 80 IPR036855 GO:0046872
Lapu8g01529 427 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Lapu8g01529 427 MobiDBLite consensus disorder prediction 373 427 - -
Lapu8g01529 427 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Lapu8g01529 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 167 IPR000571 GO:0046872
Lapu8g01529 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 304 IPR000571 GO:0046872
Lapu8g01529 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 322 346 IPR000571 GO:0046872
Lapu8g01529 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 79 IPR000571 GO:0046872
Lapu8g01529 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 122 IPR000571 GO:0046872
Lapu8g01529 427 SUPERFAMILY CCCH zinc finger 281 306 IPR036855 GO:0046872
Lapu8g01529 427 MobiDBLite consensus disorder prediction 373 392 - -
Lapu8g01529 427 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Lapu8g01529 427 Gene3D - 93 172 - -
Lapu8g01529 427 SUPERFAMILY CCCH zinc finger 139 168 IPR036855 GO:0046872
Lapu8g01529 427 SMART c3hfinal6 142 167 IPR000571 GO:0046872
Lapu8g01529 427 SMART c3hfinal6 95 122 IPR000571 GO:0046872
Lapu8g01529 427 SMART c3hfinal6 320 347 IPR000571 GO:0046872
Lapu8g01529 427 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Lapu8g01529 427 SMART c3hfinal6 277 304 IPR000571 GO:0046872
Lapu8g01529 427 Gene3D - 21 91 - -
Lapu8g01529 427 PANTHER PROTEIN PHOSPHATASE RELATED 41 380 - -
Lapu8g01529 427 MobiDBLite consensus disorder prediction 1 25 - -
Lapu8g01529 427 ProSiteProfiles Zinc finger C3H1-type profile. 320 348 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01529 Lapu-Chr8 32427638 32432209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01529 1 408 C3H Transcription Factor Family AT1G04990 47.470 5.01e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu8g01529 zf-CCCH 4.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01529 - - vra:106765262 881.708