Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01472 ATGCGAGAAGGAAGTGACCATCAAGCTATGGCACATGATAGGAATGTTGAACATATTGAAGGTGGAGTTAATAATGCTGAAAACAACTCTGGCTCTCATGTTGAGGTTGGAGTTTCCGAGCCATATGTGGGTAGGGAATTTGATTCTGAAGATGCTGCAAAGACTTTCTACAATGAGTATGCCAAACGAGTGGGTTTCAGCTGCAAAGTTGGTGCACACAGTCGTTCCAAAGCCGATGGAGGAAATATGTACTGGGAATTTGTATGTGGCAGGGAGGATTTGAAAAGAAAACTTGCTGAAAGTTGCAATGCAATGATTAGGATTGAGAAGAAGGGTCAAAATAAGTGGGTTGTTACACAATTTGTAAAGGAGCATAGCCATTCTATGGCAAGCCTTAGTAAGGTGCATAGTATTAGGCCACGCAAGCACTTTTCTAGTGTGGGAAGAACCATGCCTGAAACTTACCAAGGAGTGGGGCTTGTTCCAAGTGGTGTGATGTATGTATCTATGGATAAGAACTGCATTCCCACTAAGAATAGTCACGGGATTAGGAATATTCCTGCAACTGCTACTATTGCTGAAACAGTTCACCCAGTTAAAAGTTCAACATTGATGAATTATGCTGTTAGGCCACCTATTCAGAAGAGGACATTAGGGAGGGATGCTCACAACCTGCTGGAGTACTTCAAAAAAATGCAAGCTGAGAACCCTGGTTTCTTCTATGCAATACAACTTGATGATGATAATCATATGTCCAATGTGTTCTGGGCAGATGCAAGATCAAGGACTGCTTACGGTCATTTTGGTGATGCAGTTACTATGGACACAACTTACAGAATAAATCAATACAGAGTGCCCTTTGCTCTGTTCACTGGGGTAAACCATCATGGTCAGATGATTTTGTTTGGTTGTGCACTCCTCTTGGATAATTCTGAGGCTTCTTTTGTGTGGCTCTTCAAGACATTTTTGACAGCAATGAATGACCGTCACCCTGTCTCTATCACTACTGATCAAGACAGAGCTATCCAATCAGCAATTTCACTAGTTTTTCCTCAAACACGCCACTGTATAAGCAAATGGCATGTCTTGCGAGAAGGCCATGAGAAGTTGGCATATGTATGCAACATGCATCCAAATTTCCAGGTTGAACTTTATAATTGTATTAATCTGACAGAAACAATTGAGGAGTTTGATTCATCTTGGAATTTTATCATCAATAAATATGAACTCACAAAAAATGATTGGCTTCAGTCATTGTACAATGCTCGAGCTCAATGGGTTCCAGCATATTTCCGTGATTCATTTTTTGCAGTAATATCTCCTAATCAAGGAATTGATGGTTCTTTTTTTTATGGTTTTGTCAACCATCAGACAACATTACCAGTGTTTTTTAGGCAGTATGAACAAGCTTTGGAGAGCTGGTTTGAAAAAGAATTAGAAACAGATTATGAGACAATTTGCACCACCCCTGTCCTGAAGACACCTTCCCCAATGGAGAAGCAGGCTGCAAATCTCTATACTCGGAAAATATTTTCGAAGTTTCAAGAAGAGCTAGTTGAAACCTTTGCTTATACAGCCAACAGAGTTGAAGAAGATGGAGAAAATAGCATATTCAGGGTTGCAAAATTTGACGATGACCATAAGACTTATGTTGTCACGTTAAACCTTTCTGAGTTGAGAGCTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTATGTAGACATGTTCTAACTGTATTTACTGTGACTAATGTACTTACATTACCATCTCATTATATTTTAAAACGGTGGACAAGAAATGCAAAAAGTAGTACTGGGTCAGCTGAACACGCTGGTGAATCACATGTACTTGAGTCTTTGGCATCACGTTATAGCAATCTTTGTTGGGAAGCCATCAAATATGCTGAAGAAGGGGCAATGACTGTGGAAACTCATGATACTGCAATTTGTGCCCTTAGAGAAAGTGGAAAGAAGATTTCTTTCATGAAGAGAAGTGTTGTCAAAGTTGCTCCACCCAGTCATCCTGTCAGTGGGACTACTTATGATGACAGAAAATCCCCTACTTCAATAGCAGATACAAACCCTCTTTTGTGGCCACAGCAGGATGAAACAACAAAGAGGTTTAATCTTAATGATGCTAGTACTCCTGTTCAATCAGTTGCTGATCTAAATTTACCGCAAATGACCCCAGTCTCTCTTCAGCGGGATGATGGTCCACCTGAAAACATGATGGTTTATCCCTGTCTGAAATCTTTGACATGGGTAATGGAGAACAAGAACTCAACACCAGGGAATAGAGTGGCTGTTATCAATCTTAAGTTACAAGATTATAGCAGGAATCCGTCAACAGAATCAGAAGTTAAATTTAGTCTCTCAAAACTTACTTTGGAGCCGTTGTTTAACCATATGGTCAACATCAGCGATCAGCTTTCTGCACCAACTAGGAAGTTTGCTGTATTAAATCTAAAGCTTCCAGTTGCCGATACAAATACTGGTGCGTTTGAAGTTAAGTTTCAGGTGTCCAAGGAAACGTTAGTTGCTGTACTACGATCAATGGACTATATACGTGAGCAACTCTCGGTTCCTGGCGATGCACAAACAGAACCTATATCAAAAAGACCTCGGAAGTGA 2637 0.402 MREGSDHQAMAHDRNVEHIEGGVNNAENNSGSHVEVGVSEPYVGREFDSEDAAKTFYNEYAKRVGFSCKVGAHSRSKADGGNMYWEFVCGREDLKRKLAESCNAMIRIEKKGQNKWVVTQFVKEHSHSMASLSKVHSIRPRKHFSSVGRTMPETYQGVGLVPSGVMYVSMDKNCIPTKNSHGIRNIPATATIAETVHPVKSSTLMNYAVRPPIQKRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDDDNHMSNVFWADARSRTAYGHFGDAVTMDTTYRINQYRVPFALFTGVNHHGQMILFGCALLLDNSEASFVWLFKTFLTAMNDRHPVSITTDQDRAIQSAISLVFPQTRHCISKWHVLREGHEKLAYVCNMHPNFQVELYNCINLTETIEEFDSSWNFIINKYELTKNDWLQSLYNARAQWVPAYFRDSFFAVISPNQGIDGSFFYGFVNHQTTLPVFFRQYEQALESWFEKELETDYETICTTPVLKTPSPMEKQAANLYTRKIFSKFQEELVETFAYTANRVEEDGENSIFRVAKFDDDHKTYVVTLNLSELRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKSSTGSAEHAGESHVLESLASRYSNLCWEAIKYAEEGAMTVETHDTAICALRESGKKISFMKRSVVKVAPPSHPVSGTTYDDRKSPTSIADTNPLLWPQQDETTKRFNLNDASTPVQSVADLNLPQMTPVSLQRDDGPPENMMVYPCLKSLTWVMENKNSTPGNRVAVINLKLQDYSRNPSTESEVKFSLSKLTLEPLFNHMVNISDQLSAPTRKFAVLNLKLPVADTNTGAFEVKFQVSKETLVAVLRSMDYIREQLSVPGDAQTEPISKRPRK* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01472 878 Coils Coil 91 111 - -
Lapu8g01472 878 Pfam FAR1 DNA-binding domain 55 129 IPR004330 -
Lapu8g01472 878 MobiDBLite consensus disorder prediction 681 697 - -
Lapu8g01472 878 Pfam MULE transposase domain 272 363 IPR018289 -
Lapu8g01472 878 SMART 26again6 561 588 IPR006564 GO:0008270
Lapu8g01472 878 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 661 IPR031052 GO:0006355
Lapu8g01472 878 ProSiteProfiles Zinc finger SWIM-type profile. 550 586 IPR007527 GO:0008270
Lapu8g01472 878 MobiDBLite consensus disorder prediction 676 697 - -
Lapu8g01472 878 Pfam SWIM zinc finger 550 584 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01472 Lapu-Chr8 31924044 31929404 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lapu8g01472 MULE 7.1e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01472 - - gmx:100807296 1563.13