Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01454 ATGTCTTTCCCACCACCTGCTATTCCATCAGCTGCTGTGCCTGTCAAAATGGAGCCTAAAAAGAAATCGGTTTTGAGGCTTCCCATGGCCAGGCGTGACCTTGCTTCTAAAGGGAAGAAGTTGCAATTTCTCACCAATTATTTCAGAGTCAATGTTGGAAACACTGATGACGATTACTTCTATCAGTATAGTGTGTCACTTTCTTATGATGACGGACATCCTGTAGAGGGCAACGTAAGGAGAATGGTGGTCGACAAGTTGCAGAATGCATATAATTCTGAATTGACCAAGAAGCATTTTGCTTACGATGGGGAGAAAACTCTTTTTACACTTGGCTCTCTTCCCAGCAAGAATCTTGAGTTTATGGTTGTTATTCTGGAGGATACTGTTGTTTCTACTAGCAGCCATGATGGAAATCGAAAAAGTAAGAGGAAGAGGTCTAGTGTCCCACGTAGAGCCAAAACACTTAAAGTTCAGGTATCTTTTGCTTCAAAGATTCCATTGCAGGCCATAGTCAATGCTCACCATGGACAGGATTCTGATCAAGAAGCAATAAGAGTTCTTGATATCATTCTGAGGCAGCATGCGGCTAAACAGTGGGCCAAGAGCACACTGAAAAATTTGAGGATTAAAACAAGTACATCCAATCAAATATATAAGATTACTGGGCTCAGTGACCACACATGCAAAACTCAAATGTTTACATTGAAGAAAAAGAGTGGAGTGAATGGTGATAGTGATACTCAGGAGGTGAGTGTGTATGATTATTTTGTTAAGCATAGAAACATACCTCTCAGGTACTCCGAGGATCTCCGATGTATTAATGTTGGAAAGCCCACACGGCCAACATATTTTCCTCTTGAGGCTTTGAGTGATTGCAAGTACGATTCTGAACCTATGCTTCGAAATTGTGGTATTTCTATCAACCCTCGCTTTACTGAAGTAGAAGGTCGAGTTTTACAAGCTCCAGGGTTGGAGTTCAGTGGAGGGGAGTGCTTCGATCCAACAGATGGGAAGTGGAACTTCATTGATAAGGAATTTATTAGGCCATCAAAAATTGGATCATGGTATGTGGTAGACTTTTCTGGGCGACGTGATCTAGACAACCTTGTGGAGGATTTCATCAAGTGTGGTCGAAAGAGAGGAATTCTTGGAGGCCTGAATTCAATGTTACGCGATGAAGTTCGTGGTTCCATCCCTGTTGTTTCCAGAGTTCCCACCATCATTATTGGCATGGATGTGTCTCGTGGCTCCCCAGGGCAAACACATATTCCTTCAATTGCAGCGGTGGTTGGCTCTCGGGAGTGGCCAGGAATATCAAAGTATAGGGCATGTGTCCGTACCCAATCTCCCAATCTTGAAATGATTGACAATTTGTTTAAGAAAGTCTCTGAAGTGAACTCCGACGGCACGATTGGAGAGCGGGATGAGGGCATGATTCAAGAACTGCTGAAGGATTTCTATACTAGTTCCGGGAACAGAAAGCCTGAAAATGTTATCATCTTCAGGAGCGGGGTTAGTGAATCACAGTTCAATGAAGTTTTAAATATTGAGCTTAATCAAATTATTGAGGCTGCCAAGTTTATAGATCCTGAGTGGAATCCCAAATTTTTGGTCATTGTTGCTCAAAAGAACCATCATACTAGATTCTTTCAACCCGGCTCTCGTGATAATGTTCCTCCTGGAACTGTAGTTGATAACGCAATTTGTCATCCTCAGAACTATGATTTTTACATGTGTGCACATGCCGTAAAAATGGGTACTAGTAGACCTACACACTATCATGTTCTGTTGGATGAGATTGGGTTTTCGGCCAATGATCTGCAAGAGCTTGTGCATTCCTTATCATACGTGTATCAGCGGAGCACCTCGGCCATATCTGTGGTTGCTCCAATCTATTATGCTCACTCGGCTGCTACTCAGATGGCAATGATTATGAAATTTGAGGAAAGAATGGGGACAGGTGGTGCTGACCGTGTCCCTCAATTGCCTCCATTGAAAGAGAATATCTCTGAATCAATGTTCTTTTGCTGA 2034 0.4263 MSFPPPAIPSAAVPVKMEPKKKSVLRLPMARRDLASKGKKLQFLTNYFRVNVGNTDDDYFYQYSVSLSYDDGHPVEGNVRRMVVDKLQNAYNSELTKKHFAYDGEKTLFTLGSLPSKNLEFMVVILEDTVVSTSSHDGNRKSKRKRSSVPRRAKTLKVQVSFASKIPLQAIVNAHHGQDSDQEAIRVLDIILRQHAAKQWAKSTLKNLRIKTSTSNQIYKITGLSDHTCKTQMFTLKKKSGVNGDSDTQEVSVYDYFVKHRNIPLRYSEDLRCINVGKPTRPTYFPLEALSDCKYDSEPMLRNCGISINPRFTEVEGRVLQAPGLEFSGGECFDPTDGKWNFIDKEFIRPSKIGSWYVVDFSGRRDLDNLVEDFIKCGRKRGILGGLNSMLRDEVRGSIPVVSRVPTIIIGMDVSRGSPGQTHIPSIAAVVGSREWPGISKYRACVRTQSPNLEMIDNLFKKVSEVNSDGTIGERDEGMIQELLKDFYTSSGNRKPENVIIFRSGVSESQFNEVLNIELNQIIEAAKFIDPEWNPKFLVIVAQKNHHTRFFQPGSRDNVPPGTVVDNAICHPQNYDFYMCAHAVKMGTSRPTHYHVLLDEIGFSANDLQELVHSLSYVYQRSTSAISVVAPIYYAHSAATQMAMIMKFEERMGTGGADRVPQLPPLKENISESMFFC* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01454 677 Pfam Piwi domain 384 646 IPR003165 GO:0003676
Lapu8g01454 677 SUPERFAMILY Ribonuclease H-like 384 645 IPR012337 -
Lapu8g01454 677 Gene3D - 403 677 IPR036397 GO:0003676
Lapu8g01454 677 Pfam PAZ domain 199 290 IPR003100 GO:0005515
Lapu8g01454 677 CDD PAZ_argonaute_like 198 291 - -
Lapu8g01454 677 ProSiteProfiles Piwi domain profile. 384 647 IPR003165 GO:0003676
Lapu8g01454 677 Pfam Argonaute linker 2 domain 289 326 IPR032472 -
Lapu8g01454 677 Gene3D paz domain 178 294 - -
Lapu8g01454 677 FunFam Protein argonaute 3 399 677 - -
Lapu8g01454 677 Pfam N-terminal domain of argonaute 41 192 IPR032474 -
Lapu8g01454 677 SMART Piwi_a_2 187 647 IPR003165 GO:0003676
Lapu8g01454 677 Gene3D - 319 402 - -
Lapu8g01454 677 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 35 196 - -
Lapu8g01454 677 SUPERFAMILY PAZ domain 195 290 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01454 Lapu-Chr8 31782367 31787604 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01454 384 677 Eukaryotic Initiation Factors Gene Family AT5G43810 42.357 1.02e-70 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01454 K11593 - gmx:100792105 447.588