Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01450 ATGGCCAAGAAACGAAAGCTTCGATCCTCAGACCCTGAACCCGCCAAACCCATTGAGCCACAGCAACAAGACCAAGACTCAGGGGAACAACTCGACCAACAACAGCAACCCAACCCCGAACCAACCCTAGAGGACCCAAATACCATGGCCGTCGACGAACCAACAGAGGAACAACAGCAGGAACAGCAAATCGCCGAAGGCGAAGAAGAGGAAGAAGAATCAGAGGAGCAACAGGAGCCGGAGCCAGAAACCCTAGAAGAGCAACAGGAGCCGGAAACCCTAGAAGAGCAACAGGAGCCGGAAACCCTAGAGGCTCCGAACCACGCCGAAGCCAACGGTGCTGACGAAGAAGGGAACAACGAAGAGGAAGATGAGGATCTCAGTCTTGAAGACGAGCCGGTGGAGAAACTTCTCGAACCCTTCACGAAGGAGCAGCTGCACGCTCTTGTGAAGCAGGCTGTGGAGAGGTTCCCTGAATTCGTCGAGAGCGTCCGCCAGCTCGCCGATGTGGACCCCGCCCACCGGAAAATCTTCGTCCATGGCCTCGGCTGGGACGCCACCGCCGAAACCCTGACCTCCGTCTTCGGGAAATACGGTGAGATCGAGGACTGCAAGGCCGTCACCGACAAAGTCTCCGGCAAATCTAAGGGTTACGCTTTCATTCTTTTCAAGCACAGGGATGATGCTCGCAAAGCGCTGAAAAATCCGCAGAAAAAGATAGGGAACCGCACCACTTCTTGCCAGCTGGCCTCTGCAGGCCCTGTTCCGGCTCCCCCTCCGAATGCGAACCCGGTTTCTGAGTACACGCAGAGGAAGATCTTCGTGAGCAATGTGAGTGCTGAGATTGATCCCCAGAAACTTCTTGAATTCTTTAAGCAGTTTGGGGAGGTTGAGGATGGTCCTCTTGGGCTCGACAAAAACACTGGCAAACCTAAGGGTTTTGCCCTGTTTGTTTATAAGTCTGTGGAGAGTGCTAAGAAGGCTTTGGAAGAACCTCATAAGAACTTCGAGGGCCATACTTTGTATTGTCAGAAGGCTGTCGATGGTCCCAAGGGGAACAAGGGGTATCATCAATATCACCATCAGCAGCATTCTCACCATCACCATCATCACCAGCCTCATTATCAGAGAAAGGAGAAGAATAAGTATTCCTCTGGTGGTGGTGGACCGTCCCATGGCAGTGGTCATTTGATGGCACCCTCGGCGTCTGCTGTGGGGGGTTTCAACCCGGGAGTGCCGGCTCAAGGGTTGAATCCTGCTCTTGGACAGGCGCTGACTGCATTGCTTACCAACCAGGGAGCTGGATTGGGTCTTGGAAATCTGCTTGGAGGGCTTGGTGGTGCCCCCGTTAACCAAGCTGGGCCACCTGCCCCTTATGGGAATCAGCCTGCAATGGGATATGGGAACCAGCCAGCAATGCAACAGGGATACCAGAATCCTCAAATGGGTCAGAGCAGTGGTGTCAGACCCCACCCTGGTGCTGGCGCTCCTTACATGGGTCATTAG 1506 0.5418 MAKKRKLRSSDPEPAKPIEPQQQDQDSGEQLDQQQQPNPEPTLEDPNTMAVDEPTEEQQQEQQIAEGEEEEEESEEQQEPEPETLEEQQEPETLEEQQEPETLEAPNHAEANGADEEGNNEEEDEDLSLEDEPVEKLLEPFTKEQLHALVKQAVERFPEFVESVRQLADVDPAHRKIFVHGLGWDATAETLTSVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKNPQKKIGNRTTSCQLASAGPVPAPPPNANPVSEYTQRKIFVSNVSAEIDPQKLLEFFKQFGEVEDGPLGLDKNTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYHQYHHQQHSHHHHHHQPHYQRKEKNKYSSGGGGPSHGSGHLMAPSASAVGGFNPGVPAQGLNPALGQALTALLTNQGAGLGLGNLLGGLGGAPVNQAGPPAPYGNQPAMGYGNQPAMQQGYQNPQMGQSSGVRPHPGAGAPYMGH* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01450 501 MobiDBLite consensus disorder prediction 357 377 - -
Lapu8g01450 501 MobiDBLite consensus disorder prediction 351 402 - -
Lapu8g01450 501 MobiDBLite consensus disorder prediction 478 501 - -
Lapu8g01450 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 252 IPR000504 GO:0003723
Lapu8g01450 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 349 IPR000504 GO:0003723
Lapu8g01450 501 SUPERFAMILY RNA-binding domain, RBD 163 255 IPR035979 GO:0003676
Lapu8g01450 501 SMART rrm1_1 176 248 IPR000504 GO:0003723
Lapu8g01450 501 SMART rrm1_1 272 344 IPR000504 GO:0003723
Lapu8g01450 501 MobiDBLite consensus disorder prediction 20 43 - -
Lapu8g01450 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 341 IPR000504 GO:0003723
Lapu8g01450 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 244 IPR000504 GO:0003723
Lapu8g01450 501 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 47 348 - -
Lapu8g01450 501 SUPERFAMILY RNA-binding domain, RBD 255 369 IPR035979 GO:0003676
Lapu8g01450 501 MobiDBLite consensus disorder prediction 1 129 - -
Lapu8g01450 501 Gene3D - 166 253 IPR012677 -
Lapu8g01450 501 MobiDBLite consensus disorder prediction 62 99 - -
Lapu8g01450 501 Coils Coil 55 78 - -
Lapu8g01450 501 Gene3D - 258 395 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01450 Lapu-Chr8 31749421 31754962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01450 267 350 C2H2 Transcription Factor Family AT2G19380 29.762 3.42e-09 57.4