Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01444 ATGGGAAACTGCTGCAGGAAACCAGTGGCTCATGTTTCTTCAACGAGTTTCTTTGTGGCTGGAATCACTCGAAGTAAGACAAAACAGAACTCAAATTCTACTGAAGGAAAAGCTCCTTTAAAAACTTCAGCATCAAATGTTGACAAATACATCTCCAATAACCTTAAGTCCTTCACCTTCAATGAACTAAAAGAGGCCACTAAGAACTTCAGGCAAGAAAACTTAATCGGAGAAGGAGGGTTTGGGTTTGTATACAAGGGATGGATAGATAAGAACACTTATGCTCCCACAAGACCAGGGACTGGAATTGTAGTGGCCATCAAGAAACTTAAACGAGAAAGTTTTCAAGGCCACAGAGAATGGCTGGCAGAAGTCAATTATTTAGGCCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTACTGCTCAGATGGTAAAAACAGGCTTCTAGTTTATGAGTTTATGCATAAAGGAAGTTTGGAAAATCATTTATTCAGAAAAGGTGTTCAACCTATTCCATGGACTATCCGGATCAACATTGCAGTTGCTGTTGCAAGAGGATTAACATTTTTACATACCCTTGATACAAATGTTATATATCGTGATTTAAAGGCAGCCAACATCCTACTTGATTCGGATTTCAACCCAAAGCTCTCAGATTTTGGCTTGGCAAGAGATGGTCCTACTGGAGAGGACACTCATGTTTCCACCAGAGTTATTGGAACTCATGGTTATGCTGCACCAGAGTACGTAGCTACAGGTCATTTGACCCCAAGGAGTGATGTATACAGCTTCGGAGTTGTGTTGTTAGAGTTACTAACAGGAAGGCGTGTAGTAGAAGATGAGAGAGCTGGATTTTCAGAAGAAACACTGGTGGATTGGGCAAGGCCATTCCTGAGTGATAGCAGAAGAATTTTGAGAATCATGGATTCAAGATTAGGTGGTCAATACTCCAAGAAAGGAGCACAAGCAGCAGCAACACTTGCACTGCAATGTCTAAATGCAGATCCAAAATACAGACCAACTATGGTAAATGTTCTAGCAGCATTGGAAGCACTAAATTCCTCAAATTCATTCCCAAGGACCCCAAAATCTGGAACTGAGAATCATACAACAAAGCCTTCTAGTCATTCCCAGAAATCATCTACAGATGATAACAAACTATGA 1170 0.406 MGNCCRKPVAHVSSTSFFVAGITRSKTKQNSNSTEGKAPLKTSASNVDKYISNNLKSFTFNELKEATKNFRQENLIGEGGFGFVYKGWIDKNTYAPTRPGTGIVVAIKKLKRESFQGHREWLAEVNYLGQLHHENLVKLIGYCSDGKNRLLVYEFMHKGSLENHLFRKGVQPIPWTIRINIAVAVARGLTFLHTLDTNVIYRDLKAANILLDSDFNPKLSDFGLARDGPTGEDTHVSTRVIGTHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVEDERAGFSEETLVDWARPFLSDSRRILRIMDSRLGGQYSKKGAQAAATLALQCLNADPKYRPTMVNVLAALEALNSSNSFPRTPKSGTENHTTKPSSHSQKSSTDDNKL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01444 389 CDD STKc_IRAK 76 354 - -
Lapu8g01444 389 FunFam PTI1-like tyrosine-protein kinase 3 156 362 - -
Lapu8g01444 389 Gene3D Transferase(Phosphotransferase) domain 1 156 374 - -
Lapu8g01444 389 SUPERFAMILY Protein kinase-like (PK-like) 46 358 IPR011009 -
Lapu8g01444 389 Pfam Protein kinase domain 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01444 389 MobiDBLite consensus disorder prediction 358 389 - -
Lapu8g01444 389 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01444 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Lapu8g01444 389 Gene3D Phosphorylase Kinase; domain 1 44 155 - -
Lapu8g01444 389 PANTHER OS01G0588500 PROTEIN-RELATED 35 355 - -
Lapu8g01444 389 FunFam Serine/threonine-protein kinase BIK1 37 155 - -
Lapu8g01444 389 MobiDBLite consensus disorder prediction 358 380 - -
Lapu8g01444 389 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Lapu8g01444 389 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01444 Lapu-Chr8 31672589 31676050 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01444 27 387 Glycoside Hydrolase AT3G07070 47.326 5.18e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu8g01444 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01444 - - pvu:PHAVU_008G205600g 721.079