Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01443 ATGGCTATTGCAGCTCCAGGCCAATTGAACGTGAATGAATCGCCCACTTGTGGATCCAGAAGTGTTGATTGCTTCGAGAAATTGGAGCAAATTGGCGAAGGCACATACGGTCAGGTTTACATGGCTAAAGAGATCAAAACTGGTGAAATTGTTGCTCTGAAGAAAATACGTATGGACAATGAGAGAGAGGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTTAAGAAACTGCATCATGAAAACGTGATCAAGCTGAAAGAAATTGTGACTTCTCCAGGTCCTGAGAAAGATGAACAGGGGAGGCCAGGCAACATACTAAACCTAGTTTGTCTGCTTTTCATACTTGTTTTGGGGATTGCAGATGGTAACAAATATAAAGGTGGCATCTATATGGTTTTTGAATACATGGACCATGATTTAACAGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAGTGTTACATGAGACAGCTTTTGACGGGGCTTCACTATTGTCATGTAAATCAAGTACTTCATCGTGATATTAAAGGCTCAAATCTTCTTATAGACAATGAAGGAAATCTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCTAATCTTACAAATCGTGTCATTACGTTATGGTACAGACCACCTGAGTTGCTGCTAGGGACAACAAAGTATGGGCCTGCTGTAGATATGTGGTCAGTTGGGTGCATTTTTGCTGAGCTTCTTCAGGGGAAGCCTATCTTTCCGGGAAAAGATGAGCCAGAGCAATTAAATAAAATATATGAGCTGTGTGGAGCACCAACTGAAATCAACTGGCCTGGGGTTTCTAAAATACCTTATTATAATAAATTTATGCCAACAAGGCCAATGAAAAGACGTTTGAGGGAAGTTTTCCGGCATTTTGATCATCATGCTTTGGAGTTGTTGGAGAAGATGCTGACGCTTGATCCAGCACAGAGAATTACTGCGAAAGATGCACTTGATGCTGAGTATTTCTGGACAGATCCATTACCATGCGACCCGAAGAGTTTACCCAAGTACGAGTCATCACACGAGTTTCAGACAAAGAAAAAGCGCCAACAACAACGGCAAAATGAAGAAATGGCTAAGCGTCAGAAAATGCAGCACCCACAGCAGCACACTCGTCTTCCCCCCATTCAGCAGCCTGGACAACATGCCCAAATGCGGTCAGGACCAAACCAACCAATTCATGGCTCTCAACCTGCAGTTGCTGCAGGACCTACTCATCATTATGGGAAGCCTCGAGGTCCATCTGGTGGACCAGGAAGATATCCTCCCAATGGGAACCAAGGTGGAGGATACAATCACCCAAATCGAGGAGGTCAAGGTGGTGGTTATGGCACTGGACCTTATCCTCCTCAAGGGAGGGGGGCACCTTATGGGTCCAATAGCATGCCTAGTGGGGGTCCTCGTGGGGGTGGTGGTGGCAGCGGCTATGGAGTTGGAGCTCCAAATTATCCCCAACAAGGTGGTCCATATGGGGGTTCAGCAGCCGGTCGTGGCTCAAACATGATGGGTGGAAACCGCAATCAACAACAGTATGGTTGGCAGCAGTAA 1608 0.4515 MAIAAPGQLNVNESPTCGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPGNILNLVCLLFILVLGIADGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDQNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLQGKPIFPGKDEPEQLNKIYELCGAPTEINWPGVSKIPYYNKFMPTRPMKRRLREVFRHFDHHALELLEKMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEEMAKRQKMQHPQQHTRLPPIQQPGQHAQMRSGPNQPIHGSQPAVAAGPTHHYGKPRGPSGGPGRYPPNGNQGGGYNHPNRGGQGGGYGTGPYPPQGRGAPYGSNSMPSGGPRGGGGGSGYGVGAPNYPQQGGPYGGSAAGRGSNMMGGNRNQQQYGWQQ* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01443 535 FunFam Cyclin-dependent kinase C-2 140 382 - -
Lapu8g01443 535 FunFam Cyclin-dependent kinase C-2 12 139 - -
Lapu8g01443 535 PANTHER CELL DIVISION PROTEIN KINASE 23 348 - -
Lapu8g01443 535 CDD STKc_CDK9_like 25 342 - -
Lapu8g01443 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Lapu8g01443 535 SMART serkin_6 25 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01443 535 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Lapu8g01443 535 Pfam Protein kinase domain 25 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01443 535 Gene3D Phosphorylase Kinase; domain 1 14 139 - -
Lapu8g01443 535 MobiDBLite consensus disorder prediction 388 414 - -
Lapu8g01443 535 MobiDBLite consensus disorder prediction 520 535 - -
Lapu8g01443 535 Gene3D Transferase(Phosphotransferase) domain 1 140 382 - -
Lapu8g01443 535 MobiDBLite consensus disorder prediction 355 384 - -
Lapu8g01443 535 MobiDBLite consensus disorder prediction 353 535 - -
Lapu8g01443 535 SUPERFAMILY Protein kinase-like (PK-like) 20 350 IPR011009 -
Lapu8g01443 535 ProSiteProfiles Protein kinase domain profile. 25 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01443 Lapu-Chr8 31651987 31658041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01443 1 535 Core Cell Cycle Gene Families AT5G10270 74.307 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lapu8g01443 Pkinase 1.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01443 K08819 - gmx:100795971 882.863