Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01436 ATGTCAAGTGGAGCAACGCACTGGTGTTATGCATGCAGACAACCGATTGTGCTTGATGGGAGAGACACTCTTTGTCCTTACTGTGATGGAGGATTTATACAAGAACTTGATGAGTTGCGAGGAGCTGCACCCCAGCATACATATTCATCACAGTCGGGAGAGTTTCATCAAATGCCTGACCTTTTTGATGCTATACATGCTTTTATGGGGCAGAGAGGTTCTGACCAGAGATTCGGGCTCATGGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAAGAAACTCAAACTTTGATGTTAGAGGGAGGTCAGGTTCTTTCCCAGCTCCTGAGCAGAGTTGGGGTGTTTTTAGTTCTGGTCCTTATTTAATATTTCATGGTCATCCTGGATTCACCTTGGCTACTGGCAGCCCAAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGATTACTTTATGGGTCCTGGACTGGAAGAACTTATTGAGCAACTGACCATGAATGATCGGCGAGGACCACCCCCAGCTGCACGATCTTCGATCGATGCAATGCCTACTATTAGGATAACACAGGCACATCTTCGCTTAGATTCACACTGTCCAGTTTGTAAAGATAAATTTGAACTGGGCACTGAAGCCAGAGAGATGCCATGCAACCATATTTACCATTCTGATTGTATTATTCCTTGGTTGGTTCAGCATAACTCATGCCCTGTTTGCCGTGTTGAGTTGCCACCTCAAGGACAAGTTAGTTCCCGTGGTACTCGAAGTTTGGGAGGAAGGAATGCCAGCACCAGCAGCAGTGGCAGCAATGATAGCTCCAGGGGCAGGGAGAACAACAACCCTCAGAACCATGGAAGGAGAAATCCATTATCATTTTTGTGGCCATTCCGCTCCTCATCTAGCTCAAACAATAATCATTATTCTGAGACTGGGGGAAGCAGCTCTTCAACCACTCCTGACCAGAATAATGGAACAAGTTATAGTGGTTGGCCTTTTGATCACTAA 1005 0.4597 MSSGATHWCYACRQPIVLDGRDTLCPYCDGGFIQELDELRGAAPQHTYSSQSGEFHQMPDLFDAIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRGRSGSFPAPEQSWGVFSSGPYLIFHGHPGFTLATGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRLDSHCPVCKDKFELGTEAREMPCNHIYHSDCIIPWLVQHNSCPVCRVELPPQGQVSSRGTRSLGGRNASTSSSGSNDSSRGRENNNPQNHGRRNPLSFLWPFRSSSSSNNNHYSETGGSSSSTTPDQNNGTSYSGWPFDH* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01436 334 MobiDBLite consensus disorder prediction 247 334 - -
Lapu8g01436 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 246 IPR013083 -
Lapu8g01436 334 FunFam E3 ubiquitin-protein ligase RING1-like 163 246 - -
Lapu8g01436 334 CDD RING-H2_RNF126-like 199 240 - -
Lapu8g01436 334 Pfam Ring finger domain 198 240 IPR001841 -
Lapu8g01436 334 SUPERFAMILY RING/U-box 179 246 - -
Lapu8g01436 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 244 - -
Lapu8g01436 334 SMART ring_2 199 239 IPR001841 -
Lapu8g01436 334 ProSiteProfiles Zinc finger RING-type profile. 199 240 IPR001841 -
Lapu8g01436 334 MobiDBLite consensus disorder prediction 245 334 - -
Lapu8g01436 334 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01436 Lapu-Chr8 31614846 31618248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01436 143 257 C3H Transcription Factor Family AT5G01980 41.026 1.13e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01436 K11982 - gmx:100813674 589.726