Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01434 ATGCAAGCTGACGAGGATGTGGGGAAGATTGCAATGGCTGTGCCTCTTTTAGTTTCTAAAGCACTAGAGCTATTTCTACAAGATTTGTGTGATCGAACATACGAGATAACTTTGAGGAGGGGAGCAAAGACTATGAATGCTTTTCATTTAAAACAGTGTGTGCAGACTTTTAATGTCTTTGACTTTCTGAAAGATATTGTCAGCAAGGTTCCTGATTTAGGCGGTTCTGTTGCAAATGGTGGTGACCATACTGTAAAGAGGAGGAAAGTTGCTGAAGATGATAATGATAGCCATGAAGAGCCCAAGAGAAATCACAAGGCAGAACCAGGACATTCCAGTGGCAGAGGAAGGGGTAGGGGCAGAGGTAGGGGTCGTGGCCGTGGAATTAGAAATGTAGATCAAGAGACGAGTTCACATGCTAAATGCGAAGAAGATTCTGTTGCATTAAAGCAAAATGAAAAGGAAACTCAAAGCAATGAAAGTATGGAAAACGTGTCATCACCTGAAGAAGTTAAGCAGACTTCTCCAGTTATCAAGCCGGCTCAGGTGTCCATTCGAAATTTCGACTTAAACATGGACCCAGACGAGAATATGGATTCGTTGGCATCACCAACTCCTGTTCCAACTGGTTCTGCAAAATCGACGTCAGAAGAGAAGCATGAGGAATACCCTGGATGGTCCTTGTCTGATATGGAAAAAATGAGCATTGATCCCATTCAACTAGCTAACATAAATGGAAGGATTGATGAAGACGAAGAGGATTATGATGAAGAAATGTAA 780 0.4218 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSVANGGDHTVKRRKVAEDDNDSHEEPKRNHKAEPGHSSGRGRGRGRGRGRGRGIRNVDQETSSHAKCEEDSVALKQNEKETQSNESMENVSSPEEVKQTSPVIKPAQVSIRNFDLNMDPDENMDSLASPTPVPTGSAKSTSEEKHEEYPGWSLSDMEKMSIDPIQLANINGRIDEDEEDYDEEM* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01434 259 Gene3D Histone, subunit A 1 69 IPR009072 GO:0046982
Lapu8g01434 259 MobiDBLite consensus disorder prediction 126 151 - -
Lapu8g01434 259 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 139 - -
Lapu8g01434 259 MobiDBLite consensus disorder prediction 82 115 - -
Lapu8g01434 259 SUPERFAMILY Histone-fold 1 71 IPR009072 GO:0046982
Lapu8g01434 259 MobiDBLite consensus disorder prediction 73 231 - -
Lapu8g01434 259 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 54 IPR003958 -
Lapu8g01434 259 MobiDBLite consensus disorder prediction 152 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01434 Lapu-Chr8 31598849 31600894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01434 1 248 CCAAT-HAP5 Transcription Factor Family AT3G12480 42.701 3.76e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lapu8g01434 CBFD_NFYB_HMF 2.2e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01434 K21752 - gmx:100814800 387.497