Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01416 ATGGCTTTCACACTAGACAGGTGTGAAGATAGCATGATGTTCACTATGGAGTCTCAGAAGTCAGTGCCTGCTCCCTTCCTGACAAAGACATACCAACTTGTTGATGACCCTCGCACTGACCACATTGTGTCTTGGGGTGATGATGAAACCACATTTGTTGTGAGGAGGCCCCCAGAGTTTGCTAGAGATCTTCTTCCCAACTATTTCAAGCACAACAACTTCTCAAGCTTTGTTAGGCAGCTAAATACCTATGGTTTCAAGAAGGTAGCTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAGAAAAGGATCTAAGCACCTTCTATGTGAAATCCACAGGAGGAAAACCCCTCACCCCTATCAACAACATTACCATATGCATGACCAAGCACCACAGCTTCTTCAGCCAGATGAGAATCTGTGTTGGATTGATACTCCTCCATTACCATCTCCTAGACCAGGCAACGATATTTTAACAGCACTTTCTGAGGACAACCAAAGACTTAGGAGAAAGAACTTCATGCTCTTATCAGAACTCACTCACATGAAGAATCTATACAATGACATCATATATTTCATCCAAAACCATGTAAGTCCTGCTTCCTGTGAACAAAGAAGCAGCAGTGCTATTCTGAAGCTGGTAGAATTGGAATCATCACCTCAATCTCCAAATTTTATTAGACCAGCTAAGAGCCATATCATGGAGAAGTCTTTGGTAAGTTCTAATGATGAGCCTAATAGTTCTGTGAAGCTCTTTGGGGTTCCTCTTTGTGGCAAAAAGAGATTGCACCCAGGTAACCTTGATCAACAAGAATAG 819 0.4237 MAFTLDRCEDSMMFTMESQKSVPAPFLTKTYQLVDDPRTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAADRWEFANEYFRKGSKHLLCEIHRRKTPHPYQQHYHMHDQAPQLLQPDENLCWIDTPPLPSPRPGNDILTALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPASCEQRSSSAILKLVELESSPQSPNFIRPAKSHIMEKSLVSSNDEPNSSVKLFGVPLCGKKRLHPGNLDQQE* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01416 272 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu8g01416 272 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu8g01416 272 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 230 IPR027725 -
Lapu8g01416 272 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Lapu8g01416 272 Gene3D - 18 117 IPR036388 -
Lapu8g01416 272 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu8g01416 272 FunFam Heat stress transcription factor B-4 18 116 - -
Lapu8g01416 272 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu8g01416 272 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu8g01416 272 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01416 Lapu-Chr8 31452270 31453800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01416 12 264 HSF AT1G46264 49.669 5.08e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu8g01416 HSF_DNA-bind 1.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01416 K09419 - gmx:100776060 508.834