Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01402 ATGTGGTCCGGCACCAATAGGTCGATCAATTACCCTGAAATGGGAATGTTTGTGGTGGCGCCAGCCTCGTCGTTCCACCACCATCACCATCACCAGCAACAGCCCCAACATGACCCCGTCATGGGGGACTCCCTCAACCCCGCCACTGCACTCGGCGTGGGCGTCATCCCCCTGCTCGCCGCCACGCCTTGTCTGGAATCGGACAACTTTCTCGGAAATAGGACCCGTGGTGGGGGAATTCAGTTTTGGCAGGACCAAGCTCCCCATCAGAGCAACTACATGAAGAAGCAGCAGCAGGGGCTTCTCGACCAAAGTAACGCGAGTTCTGGAAATTTAGTTCAAAACAGTGGCGGTTTAACGGCTTCGGGGACTAGTAGTGGGGGAACAACGTGCCAAGATTGCGGAAACCAGGCAAAGAAAGATTGTACGAATAGAAGGTGTAGGACTTGTTGCAAAAGTCGAGGTTTCGATTGCCCTACCCATGTCAAAAGCACATGGGTTCCCGCGGCACGCCGGAGAGAGCGCCAGCTTATGACGGTGGCCACTGCGGCGGTTGCTGGTTCCAGTGGCTCCACCTCGGGGACTAAAAAACCTAGGCTCATTGCTTCACAAACCACTACAACTTCTCACACTTCCACTTCTAACACCACTCCTCCAAGAAGCTTTGACACTAGCTCTAGCCATCAAGATGCGGGTTTCAAGGAGTCTTTACCTGGGCAAGTACGTGCACCAGCGGTTTTCAAGTGTGTTAGAGTGACGGCGGTGGAGGATGGGCAAGATGAGTACGCGTATCAGGCTGTGGTGAAGATCGGTGGCCACGTGTTCAAAGGGTTTCTCTATGATCAAGGAATGGAGAATAGGGATGTGTATCCAAACCTATCTGAGTTGCATTTGGGTGGCGGAAATGGGGGAAGTGGGAGTGGAGGGAGTGGTGGGGTGGGGAGAAATGGGGTCTCTTCTTCTCCAATGATGGATCCTTCTGATGTTTATGCAGCTTCGGGTGGAGGGTTACTTGGGGGTTCTTCTGCTTATGGTAATTCAATGAACTGA 1050 0.5305 MWSGTNRSINYPEMGMFVVAPASSFHHHHHHQQQPQHDPVMGDSLNPATALGVGVIPLLAATPCLESDNFLGNRTRGGGIQFWQDQAPHQSNYMKKQQQGLLDQSNASSGNLVQNSGGLTASGTSSGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTVATAAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGMENRDVYPNLSELHLGGGNGGSGSGGSGGVGRNGVSSSPMMDPSDVYAASGGGLLGGSSAYGNSMN* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01402 349 NCBIfam putative zinc finger domain, LRP1 type 130 172 IPR006510 -
Lapu8g01402 349 MobiDBLite consensus disorder prediction 182 233 - -
Lapu8g01402 349 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 23 333 IPR007818 GO:0003700|GO:0006355
Lapu8g01402 349 MobiDBLite consensus disorder prediction 90 138 - -
Lapu8g01402 349 NCBIfam LRP1 C-terminal domain 237 284 IPR006511 -
Lapu8g01402 349 Pfam Domain of unknown function (DUF702) 128 285 - -
Lapu8g01402 349 MobiDBLite consensus disorder prediction 300 326 - -
Lapu8g01402 349 MobiDBLite consensus disorder prediction 24 44 - -
Lapu8g01402 349 MobiDBLite consensus disorder prediction 182 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01402 Lapu-Chr8 31323649 31326451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01402 13 329 C2H2 Transcription Factor Family AT5G12330 52.836 8.57e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lapu8g01402 DUF702 9.2e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01402 - - vun:114194574 588.956