Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01393 ATGGCTTTCTTCAGGAACTTTTCAAATGATACAGTCTCACATGGTGTAATGGAAGATAAAAACCAAGGACAGAATGCTAATAGAACTCATAGATCAGTAGGTAATGAATGTACTGATGCAACTTCTAGTGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGATGGCGAACCAGATGGTTCTGGTAGACTGCAAACTGAAGCAACAACCGATGATGGAGATGCTGGGAAAGAATCAACCTTGCAGACTGCTGGTAGTAAAACAGCTATGATGGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGCGAGCAAATGGGCCCTCAAAATGGTTCTGAATCTGGGCCGGAATCAAAAAGTGGATCAGATTATAGAAATGCAGATGGGTCTGAAGATATTTCATTGGATGGAAGAGCAGGAAGATTAGACTCAGATGATGATGATGGCCAAAAGGAGGCAGGAAAAGGTCCAAGAGGTCACTCTGATGTTCCTGCTGAAGAGATGTTGTCGGATGAGTATTATGAGCAGGATGGGGAAGAGCAAAGTGATTCACTACATTATGCTGGTATCAAAAAGCCTTCTGAATCGAACTCATGGCCGCAAAGGATGTCAACCAATGCAAATAGAACTTTGCACAGGAATTCAAGGTTTTTGGATGATGGTGAAGAAGATGACGACGAAGATGGAGATAATGATAATGATGGTGATGATGCCGATTATGAAGAAGAGGATGAAGCGGATGAAGATGATCCTGATGATGCAGACTTTGAGCCTGCCACAACTAGTCATGCTGGAAATAAGGATAAAGATTGGGAAGGTGAAGGCTCAGATGAAGATGATGACAGTGATGAAAATATAGTTGTCTCTGATGAGGATGAAGCTTTCTATGCTAAACGGCCTAAAGGAAGGCAACGAGGTAAGGTTGGACAAAACATAAAATCTGCCAGAGATCGCAAAGTGTATGCGGCATCTAGTCGGCAAAGAAGAGTTAAATCATCTTTTGAGGACAATGAGTCAACAACGGAGGATTCTGATAGTGACAGTGATGAGGATTTTAAAAGCTCAAAAAAGAGGAGTGTTCATGTTCGCAAAAATAATGGTCGTTCTTCTTCAGCTACAGGTTTTTCTACGCGCAACAGTGAGGTTCGCACTTCTAGTAGGACTGTTAGGAAGGTATCATATGTGGAAAGTGAAGAAAGTGAAGAAGTTGATGAAGGGAAAAAGAAAAAGTCCCAAAAGGAAGAAGTTGATGAGGACGATAGTGACTCCATTGAAAAAGTGCTTTGGCATCAACCAAAGGGCACAGCTGAAGATGCTGAAAGGAATAATCGATCAACAGAGCCTGTTTTAATGAGTCACCTGTTCGATTCAGATATTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAAGGGCAGTCACATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTGCAAAACCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATGAGGTACAGGAGGACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATCAAACAGAACAGTCAGGTGGAAAGGATAATTGCAGATAGAATCAGCAAAGATAATTCAGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCCTATGCTGAAGCGACTTGGGAAAAGGACATTGATATTGCTTTTGCCCAACATGCTATTGACGAGTATAAGGCTCGTGAGGCTGCTATGGCTATTCAAGGAAAGATGGTAGATTCTCAGCGTAAGAAAAGTAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAGTGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATTATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCACTCTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGTGCCAGTCGGGAGGTTTGTCAACAATATGAATTTTATAATGAAAAAAGACCAGGGAAGCCAATAAAATTCAATGCACTTTTGACGACATATGAAGTAGTTTTGAAGGATAAGGCTGTTCTGTCCAAGATGAAATGGAGTTATCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAGTTGTATACAACACTTTCTGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCCTTGCTTCATTTCCTTGATCCTGACAAGTTCAGGAGCAAGGATGAATTTGTTCAAAACTACAAGAATCTGAGTTCTTTTAATGAAAATGAGCTTGCAAATCTTCATACAGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCAAAAATTGAGCGTATCCTCCGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGGAATTTTCACAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTAAAAAAGTGCTGCAACCATCCCTTTTTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCAGGGAGTAGTGATAACAGTAAACTAGAGAGAATTGTTTTTAGCAGCGGCAAGCTTGTCATACTTGATAAACTGCTTGTTAGATTGCACGAAACCAAGCATCGTGTTTTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAATATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTTTGGGTATCAACCTTGCCACAGCAGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTTCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGTAAAAGTGTTGAGGAAGATATTCTGGAACGTGCCAAGAAGAAAATGGTTCTGGACCACTTGGTGATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGCAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCTGAAGAGCTTTTTAAGGAAGAAAGAAACGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATATAGATGAAATCCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGATGGAGAACAGGGAAAGGAGTTATTAAGTGCCTTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGGGAGTTTCTGGAGCCGATGGATAAAGCCTGATTCTGTGTTCCAAGCTGAGGAAGCTCTTGCTCCTCGATCTGCTAGAAATATTAAAAGCTACGCAGAAGTTGATCCATCCGAAAGAACTAATAAAAGAAAAAAGAAGGAACCTGAACCACCTGAACGAGTTCCGAAACGCAGGAAAGCAGAGTATTCTGCTCCTGCAGTACCAATGATTGAAGGAGCATGTGTTCAAGTGAGAAATTGGTCATATGGGAATTTATCTAAAAGAGATGCACTTCGTTTTTCTCGTTCAGTTATGAAATATGGCAATGAGAGCCAAGTTGACTTAATCGTTGCTGAAGTGGGTGGTGCTGTTGGTACAGCTCCAACTGGAGCACAGATTGAACTCTTCAATGCTCTTATTGATGGCTGTACAGAGGCAGTGGAACTTGGAAATTTAGATGTGAAGGGGCCTCTGCTGGATTTTTTTGGTGTCCCTGTGAAGGCAAATGATCTACTCACCCGTGTCCAACAACTTCAACTTTTGGCAAAGCGCATTGATCGATATGAAGATCCTATTGCACAATTTCGTGTTCTGTCATATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTGCTTCTTGGAATATATTTCCATGGGTTTGGTAATTGGGAAAAGATAAGATTAGATGAAAGACTTGGCCTCACAAAAAAAATTGCGCCTGTAGAACTTCAACACCATGAAACTTTCTTACCACGAGCTCCAAATTTAAAAGATCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCGGTTCTTGGTGTGAAAAATGCCAATAGCAAAGTGGGACGGAAGGCTTCGAAGAAAGAGAGAGATAATACCATGTCATTGGTACGTGGGCAGGAGAAAAAGAAAAAATCAGGTTCTGTTAATGTCCAAATTAGAAAGGATAGATTTCAAAAACCCCAGAAGGTTGAATCTATAGTTAAGGAAGAGGGTGAAATGTCTGACAACGAGGAAGTATATGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGGTTGCAGCAAACTAGTGCAAATCTTCCTAAGGAAAAGGTGCTTTCAAAAATACGCAACTATTTGCAACTTCTGGGGCGAAGGATAGATCAAATTGTGTTGGAGCATGAAGAGGAACCCTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAGTATGTCTCCACTTTTTCCCATCTTTCAGGGGAAAGGCTTCACCAAATATATTCAAAACTTAGACAGGAGCAAGATGAGGCAGGGGTTGGCCCCTCTCACGGCAATGGCTCGGTATCTGTCCCATTTACCAGAAATGGGAACCCATTCCGTCGCCATATGGAGAGGCAAAGAGGATTGAAAAATATGAGTACCTATCAAATGCCAGAACCAGTTGATAATAGTGGAAAATATGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGATAATCAATTCCAGGGCCAGCCGCCACCTCAAAGGACCTTAAGTAATGGAATCCGGGTAACTGATCCTAATTCACTCGGGATCCTAGGTGCTGGCCCATCGGATAAACGCTTTGCCAATGAGAAACCTTACAGGACACAACCTGGTGGGTTTCCTTCAAGACAAGGCTTCTCTTCAGGTATAAAGTGA 5280 0.4093 MAFFRNFSNDTVSHGVMEDKNQGQNANRTHRSVGNECTDATSSEKEFDMNMEAQYESDGEPDGSGRLQTEATTDDGDAGKESTLQTAGSKTAMMGRWGSTFWKDCEQMGPQNGSESGPESKSGSDYRNADGSEDISLDGRAGRLDSDDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQDGEEQSDSLHYAGIKKPSESNSWPQRMSTNANRTLHRNSRFLDDGEEDDDEDGDNDNDGDDADYEEEDEADEDDPDDADFEPATTSHAGNKDKDWEGEGSDEDDDSDENIVVSDEDEAFYAKRPKGRQRGKVGQNIKSARDRKVYAASSRQRRVKSSFEDNESTTEDSDSDSDEDFKSSKKRSVHVRKNNGRSSSATGFSTRNSEVRTSSRTVRKVSYVESEESEEVDEGKKKKSQKEEVDEDDSDSIEKVLWHQPKGTAEDAERNNRSTEPVLMSHLFDSDIDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDMRYRRTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMAIQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNYTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNEKRPGKPIKFNALLTTYEVVLKDKAVLSKMKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHTELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEADGEQGKELLSAFKVANFCNDEDDGSFWSRWIKPDSVFQAEEALAPRSARNIKSYAEVDPSERTNKRKKKEPEPPERVPKRRKAEYSAPAVPMIEGACVQVRNWSYGNLSKRDALRFSRSVMKYGNESQVDLIVAEVGGAVGTAPTGAQIELFNALIDGCTEAVELGNLDVKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIDRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIYFHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSKVGRKASKKERDNTMSLVRGQEKKKKSGSVNVQIRKDRFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGVGPSHGNGSVSVPFTRNGNPFRRHMERQRGLKNMSTYQMPEPVDNSGKYEAWKRRRRAESDNQFQGQPPPQRTLSNGIRVTDPNSLGILGAGPSDKRFANEKPYRTQPGGFPSRQGFSSGIK* 1760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 367 393 - -
Lapu8g01393 1759 ProSiteProfiles Chromo and chromo shadow domain profile. 424 512 IPR000953 -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 1471 1498 - -
Lapu8g01393 1759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 949 1100 IPR001650 -
Lapu8g01393 1759 Pfam Helicase conserved C-terminal domain 946 1059 IPR001650 -
Lapu8g01393 1759 ProSiteProfiles Chromo and chromo shadow domain profile. 537 601 IPR000953 -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 1470 1498 - -
Lapu8g01393 1759 Coils Coil 1089 1109 - -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 1215 1249 - -
Lapu8g01393 1759 CDD CD1_tandem 422 502 - -
Lapu8g01393 1759 FunFam protein CHROMATIN REMODELING 5 isoform X2 539 591 - -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 1691 1759 - -
Lapu8g01393 1759 SMART helicmild6 975 1059 IPR001650 -
Lapu8g01393 1759 SUPERFAMILY Chromo domain-like 420 504 IPR016197 -
Lapu8g01393 1759 Gene3D - 410 536 - -
Lapu8g01393 1759 SMART DUF4208_2 1524 1629 IPR025260 -
Lapu8g01393 1759 SUPERFAMILY Chromo domain-like 516 592 IPR016197 -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 1633 1659 - -
Lapu8g01393 1759 CDD SF2_C_SNF 935 1070 - -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 222 257 - -
Lapu8g01393 1759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 853 1135 IPR027417 -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 78 93 - -
Lapu8g01393 1759 SMART chromo_7 423 505 IPR000953 -
Lapu8g01393 1759 SMART chromo_7 535 594 IPR000953 -
Lapu8g01393 1759 Gene3D - 1356 1471 - -
Lapu8g01393 1759 Pfam Domain of unknown function (DUF4208) 1536 1628 IPR025260 -
Lapu8g01393 1759 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 860 1090 - -
Lapu8g01393 1759 Pfam Chromo (CHRromatin Organisation MOdifier) domain 538 592 IPR023780 -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 196 214 - -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 1699 1719 - -
Lapu8g01393 1759 Gene3D - 620 859 IPR038718 -
Lapu8g01393 1759 FunFam Photoperiod-independent early flowering 1 599 873 - -
Lapu8g01393 1759 CDD CD2_tandem 535 591 - -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 126 169 - -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 1 446 - -
Lapu8g01393 1759 Pfam SNF2-related domain 647 917 IPR000330 GO:0005524|GO:0140658
Lapu8g01393 1759 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 199 1655 - -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 275 292 - -
Lapu8g01393 1759 Coils Coil 1143 1163 - -
Lapu8g01393 1759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 641 813 IPR014001 -
Lapu8g01393 1759 Gene3D - 860 1090 IPR027417 -
Lapu8g01393 1759 SMART ultradead3 625 825 IPR014001 -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 394 446 - -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 312 340 - -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 105 125 - -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 1220 1248 - -
Lapu8g01393 1759 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 759 768 IPR002464 -
Lapu8g01393 1759 Gene3D - 539 591 - -
Lapu8g01393 1759 MobiDBLite consensus disorder prediction 1 40 - -
Lapu8g01393 1759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 850 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01393 Lapu-Chr8 31204988 31223914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01393 651 1086 RAD5 or RAD16-like Gene Family AT1G02670 25.397 3.40e-33 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu8g01393 SNF2_N 1.4e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01393 K11367 - gmx:100808039 3092.37