Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01391 ATGCTAACAGCAATCCTCAGAAGAACTTGTTCCACCTTCTCAAGGCGCTCTTTCCCCGCCGTCTTAATCTCCGCCAGCAACGACTGCCGGCCTCTCTCCACCGCCTTCATTTCCAGAACCTTTCACTCCAAACCCGGTCCGTTGAATTTCCGTTCTTCTTTATATCACCGCGCGGAATATGCTGTTGAAGATTTCCCTTACGAAGAGGGGTCGAAAGGAAACGCCGACGATGGCCTCGAGATCGCGAAGCTCGGAATCTCTCAGGATATTGTCTCTGCTTTGGCCAAGAAAGGCATCGCCAAGCTCTTCCCCATTCAGAGGGCTGTTCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGGACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATAAGATAATTCAGTTTAATGCTAAGCATGGGCGGGGGAGGGATCCTTTGGCTTTAGTTCTGGCTCCAACTAGAGAACTTGCTAAGCAGGTTGAGAAGGAGTTCTATGAGGCGGCACCTAACTTGGATACAATTTGTCTTTATGGGGGTACGCCAATCTCTCGGCAGATGAGGCAGCTCGATTACGGGGTTGATATTGCTGTGGGAACACCTGGTCGGATCATTGACCTTCTCAACAGAGGTGCTCTAAATCTGAAGGAAGTTCAATTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGCTTTCAGGAGGAGGTGGAGAGGATCTTGGAGAGGTTGCCCCCTAAACGTCAGACTCTTATGTTCTCTGCCACAATGCCATCTTGGATAAAGCAGATTTCACGCAATTACCTGAATGATCCCCTGACAATTGATCTAGTTGGAGATTCTGATCAGAAGCTAGCAGATGGAATTTCACTGTACTCCATTGCATCTGATTTGTATGTTAAAGCGGGAATTCTTGCACAGCTAATAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCAGACCGATTATCATATACCATGGCAAAAAGTGTTCAATGCGAGGCTTTGCATGGAGACATATCACAAGCTCAGAGGGAAAAAACTCTTGCTGGCTTCAGAAATGGTCATTTTAATGTTTTGGTGGCAACTGATGTGGCCTCACGTGGGCTTGATATTCCTAATGTTGATCTTATTATACATTATGATCTTCCCAATTCTTCAGAGATATTTGTTCATCGATCTGGACGAACAGGTCGGGCTGGTAAGAAAGGAACTGCTATTCTTGTGTATACAGAAGATCAATCAAGGGCTGTGAGGCTTATTGAGCGTGATGTGGGCTGTAGATTTACAGAGCTACCACGGATTGCTGTTGATAGTGCATCAGTGGACGCAATTGGCATGGGTGGAGGGCGATTTGGTTCTTTTGGAGGTTCAAGGGATCGTCGATATGGTGATACAGGTTTTGGCCGTGGTCCTGGATCTGGCCGTTCTGGTGGGTACAATAACAGTGGATTTGGCCGCTCTAGCTTTGGAGATTCTGGTGAGAGGTCTGGTGGACATAGTTATAATCGTTTTGGTGGCTCTGGTTCAAGTCAATCAGGAGGGGGGTTTTCTGGTAATTCATCTGGTGAAATGAATAGATATGGTGGATCGAGCTCTGGTCGTTTTGGCTCATCTGGTGGCTTTGGCTCCGGTCAATCAGGAAGTAGATCTGGTCGATCATCCAGTGGGTCTAGGTTTAGTCGTCCAGATGATTTTGGGGGATTTGGTGGTTCAGATCGCTCGGGTAGTTTTGGAGATCTTGGCTCAGGCCAATCTAGTGGCTTTGGTGATTCTCGTGGTAGTAATCAGAACAATAGAAGACCTTTTTAA 1863 0.4659 MLTAILRRTCSTFSRRSFPAVLISASNDCRPLSTAFISRTFHSKPGPLNFRSSLYHRAEYAVEDFPYEEGSKGNADDGLEIAKLGISQDIVSALAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFYEAAPNLDTICLYGGTPISRQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVVLDEADQMLQVGFQEEVERILERLPPKRQTLMFSATMPSWIKQISRNYLNDPLTIDLVGDSDQKLADGISLYSIASDLYVKAGILAQLITEHAKGGKCIVFTQTKRDADRLSYTMAKSVQCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLIIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVRLIERDVGCRFTELPRIAVDSASVDAIGMGGGRFGSFGGSRDRRYGDTGFGRGPGSGRSGGYNNSGFGRSSFGDSGERSGGHSYNRFGGSGSSQSGGGFSGNSSGEMNRYGGSSSGRFGSSGGFGSGQSGSRSGRSSSGSRFSRPDDFGGFGGSDRSGSFGDLGSGQSSGFGDSRGSNQNNRRPF* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01391 620 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 457 IPR001650 -
Lapu8g01391 620 Pfam DEAD/DEAH box helicase 103 272 IPR011545 GO:0003676|GO:0005524
Lapu8g01391 620 MobiDBLite consensus disorder prediction 520 578 - -
Lapu8g01391 620 CDD SF2_C_DEAD 310 427 - -
Lapu8g01391 620 Pfam Helicase conserved C-terminal domain 312 418 IPR001650 -
Lapu8g01391 620 MobiDBLite consensus disorder prediction 493 513 - -
Lapu8g01391 620 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 51 459 - -
Lapu8g01391 620 Gene3D - 80 288 IPR027417 -
Lapu8g01391 620 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 284 IPR014001 -
Lapu8g01391 620 Gene3D - 300 460 IPR027417 -
Lapu8g01391 620 SMART helicmild6 338 418 IPR001650 -
Lapu8g01391 620 CDD DEADc 90 285 - -
Lapu8g01391 620 FunFam ATP-dependent RNA helicase RhlE 70 287 - -
Lapu8g01391 620 MobiDBLite consensus disorder prediction 472 620 - -
Lapu8g01391 620 SMART ultradead3 98 301 IPR014001 -
Lapu8g01391 620 MobiDBLite consensus disorder prediction 595 620 - -
Lapu8g01391 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 439 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01391 Lapu-Chr8 31181489 31186120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01391 84 450 Eukaryotic Initiation Factors Gene Family AT3G19760 33.154 4.23e-67 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01391 - - gmx:100786041 935.25