Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01387 ATGAAGCTTTCTTCTTCTGGATTTAATCAACCGGGTGAAGAAGAAGGGGAGAAAAAATGTTTGAATTCTGAGCTTTGGCATGCATGTGCTGGCCCTCTGGTTTCTCTGCCTCCTGTTGGAAGTCGTGTAGTCTACTTTCCCCAGGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAGGGAAGTAGATGCACATATTCCTAATTACCCTAACTTGCCTCCGCAACTTATCTGTCAGCTTCACAATGTAACAATGCATGCAGATGCTGAAACAGATGAAGTATATGCACAGATGACTCTGCAACCTCTAAGTCCACAAGAGCAAAAGGAGGTGTATCTTATGCCTGCTGAATTGGGCACTCCCAGCAAGCAACCGACCAACTACTTCTGCAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTTCTCTTGATTACTCACAGCAGCCTCCTGCTCAAGAGCTATTTGCCAGAGATCTTCATGATAATGAATGGAAGTTTAGACACATATTTCGAGGTCAGCCCAAAAGGCATCTTCTCACTACTGGTTGGAGTGTCTTTGTCAGTGCCAAGAGGCTTGTTGCCGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTCTTGGGCATACGGCGTGCAAATCGTCCACAAACCATCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCTACAAACAGCCGCTTTACTATATTCTATAATCCTAGGGCAAGTCCATCTGAATTTGTCATTCCTTTGGCCAAGTATGTTAAAGCAGTGTATCATACACGGGTTTCTGTTGGCATGCGATTTAGGATGCTGTTCGAGACAGAAGAATCAAGTGTTCGTCGATACATGGGTACCATAACTGGTATTAGTGATTTAGATCCGGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCTAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCATCGCCATTCCCCTTAAGGTTGAGACGTCCTTGGCCAACGGGCCTACCTTCTTTGTATGGTCTCAAAGATGGAGACATGGGCATTGGTTCTCCATTCATGTGGCTCCAAGGTGGACTTGGGGATCAAGGAATGCAATCTTTAAACTTCCAGGGGCTTGGTGTTACACCATGGATGCAACCTAAACTTGAAGCTTCTCTACCAGGTCTCCAACCAGAGTTATACCAAACAATGACTTCTTCTGCATTCCAGGAAATGAGGACAATGGATCCTTCAAAATCTTCCCAGTCTCTGTTGCAGTTTCAGCAGACTTCAAATGTTCCCAGTGCTCATACTTCTGAGGTACAGAGGCAAGTATTATCACAGTCTCAGCCTCAAAGCACCCTTCTACAAAATTTTCAAGAAAACCAAGTGCCAGCTCAGTCACAACTTCTGCAACAGCAGTTGCATCGTTACCACCCATACGGTGATCAGCGGCAGCAGCAGCAACAACTTAAAAATTTGCCTGTTCAGCAGCAGTTACCAAATGTCGTATCTCCTTTGTCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCTCCCATGCAAGCTCTTGCTACACATTGCCAGCAGCAGAGTTTTCCTGAACCTATCAGGAATCATATTTCTGGTTCTGATGTTTCCCCTATCCAGAGTCTACTAGGTTCGTTCTCCCAGGATGGAACATCCCAGTTACTTAACTTGAATGGATCCAATGCCGTTATATCTTCTGCATCCATCCTACCCAAGCAAATAACAGTTGAACCTCAGCTTCCCTCTGCTGCTGCTCAGTGTGTATTGCCTCAGGTGCAAAACTTGGGATCATCACAATCAAATGTCTCTGAACTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATACCATGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGCATGTCAAACCTGAGAAATATGGGCAATGTGAATGATTCATTATCATTGCCATTTTCTGCTTCAAATTGTGGTGGTGCTACAGGCACTGATTTCCCCTTAAGTTCAAACATGACAACTTCGAGTTGCGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAACACACAAACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCCTTTGGCAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGAAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATAAAAATACTATCTCCACTAGAAGTGCAGCAAATGGGCAAAGGTGTTAGTCCTTCTACATCTGCCCCAGGTCACAAACTTTCTACCTCTGGAAACTCTTGTGATAATTATGTGAGTCAACAAGAGTTGAGAAGTTCCAGAAACGGCATGGCATCAATGGGGTCTTTTCACTTGGCTCCATTGGGGGTAAGTTTCTCCCCTTCAATCTCTTACCTTCATGTTGAAACCATTCAGATCCTCTATCAATGTGAGTAG 2766 0.4501 MKLSSSGFNQPGEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKEVYLMPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDYSQQPPAQELFARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPTGLPSLYGLKDGDMGIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPKLEASLPGLQPELYQTMTSSAFQEMRTMDPSKSSQSLLQFQQTSNVPSAHTSEVQRQVLSQSQPQSTLLQNFQENQVPAQSQLLQQQLHRYHPYGDQRQQQQQLKNLPVQQQLPNVVSPLSNFASGTQSQSPPMQALATHCQQQSFPEPIRNHISGSDVSPIQSLLGSFSQDGTSQLLNLNGSNAVISSASILPKQITVEPQLPSAAAQCVLPQVQNLGSSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNLRNMGNVNDSLSLPFSASNCGGATGTDFPLSSNMTTSSCVDESGFLQSSENVDQANTQTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKGVSPSTSAPGHKLSTSGNSCDNYVSQQELRSSRNGMASMGSFHLAPLGVSFSPSISYLHVETIQILYQCE* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01387 921 Gene3D - 754 850 - -
Lapu8g01387 921 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 851 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu8g01387 921 MobiDBLite consensus disorder prediction 453 490 - -
Lapu8g01387 921 Pfam AUX/IAA family 748 843 IPR033389 -
Lapu8g01387 921 SUPERFAMILY CAD & PB1 domains 753 835 - -
Lapu8g01387 921 SMART B3_2 129 231 IPR003340 GO:0003677
Lapu8g01387 921 MobiDBLite consensus disorder prediction 851 873 - -
Lapu8g01387 921 FunFam Auxin response factor 127 231 - -
Lapu8g01387 921 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Lapu8g01387 921 Gene3D - 293 365 - -
Lapu8g01387 921 FunFam Auxin response factor 293 365 - -
Lapu8g01387 921 CDD B3_DNA 128 229 IPR003340 GO:0003677
Lapu8g01387 921 Gene3D - 127 230 IPR015300 -
Lapu8g01387 921 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu8g01387 921 FunFam Auxin response factor 754 850 - -
Lapu8g01387 921 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Lapu8g01387 921 ProSiteProfiles PB1 domain profile. 759 845 IPR000270 GO:0005515
Lapu8g01387 921 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01387 Lapu-Chr8 31119186 31141627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01387 1 486 B3 DNA Binding Superfamily AT1G30330 83.265 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu8g01387 AUX_IAA 4.5e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01387 - - gmx:100810798 1663.66