Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01381 ATGAACAACACTATTCCAGGTTGGGATTTTGAGAGTGATACATGTCTCACCAACCAGAGAAAGCCCACAGGGCACGACCAAGAACTTGTAGAACTCCTATGGCAAAATGGGCAAGTAGTTATGCAAAGCCAAGCAAATAGGAAGCTACTCGGGAATTCGTCTAACTTGAGACAGGTGCAGAAAACGCATCAATCGACATTAAGGTTTGGGAACTCAAACAACTTGGATCAAGAAGAGGCAGCCCCATGGATCCAATACCCTCTTGAGAACCCTTTAGAACAAGAATTTTGTTCAAACCTTTTATCTGAGCTACCACCACCTTGTGAAGTTGAATCTTATTACAAGCCAATCAGGCAATTGGAAGAGGAAAAGTTTGCCAATATTTTTTCCCGTTGTGTCCCCCATCATCCTCCACCTTCACAACCACCACCATCTAACATGAAATCCTCCTGTGTTCAGGGACTCCAAGAGAATCCTATGCCTGCTCCAGGATTTCATGTTCCCCATTCATCTCAGAAAATCAATGAATTTGGTGCATCACGAAAGGTGCTAAATTTTCCTCACTTTTCAACACCCCGTAATCTTTCTTCACCATGTCAGAAAACTACCGCTAACCTCTCACAAAATGAGGCTAGAGAGCACTCAGTGATCACGGTTGGTTCAAGTCACTGTGGCAGCAATCACCTCCCTCAGGACCAAGATGTAAGCAAGGTTGCAAGCAGTGGTGTTTGGGCTACCACTAATAATACTACTTTATCTGCTGAGCCTGAAGCTGTAGAGTGTGTCCAGAGACCAATTCCTAGGAGGGAGAAAGGAAAATCAGAGATGATTGAACCAACTATGACTTCATCTTCCGGTGGCTCAGGCAGTACTGGTATTGGACGAACTTGTTCCCTATCAACAAGAGAACATGGCCAAAAGAGAAAAGGGACAGAAGAAGAAGCATTAGAGGAACAAAGTGAGGCCACAGAACTTAAATCAGCTGATGGAAAGAAGTTATCTCAGCGGACGGGGTCTTCCAGAAAGAACCGTGCAGCTGAAGTGCATAATCTATCAGAAAGGAGAAGAAGAGATAGGATTAACGAGAAGATGAGAGCATTGCAGCAACTGATACCTAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTAAAATCACTTCAGTTTCAGCTTCAGGTAATGTACATGGGGGCTGGCATGACACCAGTGATGTTTCCAGGGATTCAGCACTATATGCCACAGATGGGAATGGGAATTGGTGGACCTTCCTTGCCTTCCATTCACAACCCAATGCAATTACAAAAACTGCCACATGGTCAAGCCATGTCTGTGCCTCAGCCTCAGATGCCAAACCAGAATTTAATGTGCCAAAATCCAGTTTTGGGTGCCTTCAATTACCAAAATCAGATGCAAAACCCATGCCTTTCAGAACAATATGCACGTTACATGGGTTATCATCTCATGCACAGTGCCTCTCAGCCAATGAATGTGTTGAGATATGGCTCCCAAGCACTGCAACATGGTGAAACAATGATTGCAGAAGGCAATAATAGCAGTGGACCCATGAGTGGAACAGCTAAGGTTGATGATGCTGTTAGTGGCAAAACGGGTTCTTCCACCTTTAACTGA 1647 0.442 MNNTIPGWDFESDTCLTNQRKPTGHDQELVELLWQNGQVVMQSQANRKLLGNSSNLRQVQKTHQSTLRFGNSNNLDQEEAAPWIQYPLENPLEQEFCSNLLSELPPPCEVESYYKPIRQLEEEKFANIFSRCVPHHPPPSQPPPSNMKSSCVQGLQENPMPAPGFHVPHSSQKINEFGASRKVLNFPHFSTPRNLSSPCQKTTANLSQNEAREHSVITVGSSHCGSNHLPQDQDVSKVASSGVWATTNNTTLSAEPEAVECVQRPIPRREKGKSEMIEPTMTSSSGGSGSTGIGRTCSLSTREHGQKRKGTEEEALEEQSEATELKSADGKKLSQRTGSSRKNRAAEVHNLSERRRRDRINEKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMYMGAGMTPVMFPGIQHYMPQMGMGIGGPSLPSIHNPMQLQKLPHGQAMSVPQPQMPNQNLMCQNPVLGAFNYQNQMQNPCLSEQYARYMGYHLMHSASQPMNVLRYGSQALQHGETMIAEGNNSSGPMSGTAKVDDAVSGKTGSSTFN* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01381 548 MobiDBLite consensus disorder prediction 518 548 - -
Lapu8g01381 548 MobiDBLite consensus disorder prediction 301 331 - -
Lapu8g01381 548 CDD bHLH_AtPIF_like 344 407 IPR047265 -
Lapu8g01381 548 MobiDBLite consensus disorder prediction 277 300 - -
Lapu8g01381 548 SMART finulus 350 399 IPR011598 GO:0046983
Lapu8g01381 548 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 407 IPR036638 GO:0046983
Lapu8g01381 548 FunFam Basic helix-loop-helix transcription factor 339 402 - -
Lapu8g01381 548 Gene3D - 339 401 IPR036638 GO:0046983
Lapu8g01381 548 PANTHER TRANSCRIPTION FACTOR PIF3 18 482 IPR044273 GO:0003700|GO:0006355
Lapu8g01381 548 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 393 IPR011598 GO:0046983
Lapu8g01381 548 MobiDBLite consensus disorder prediction 1 21 - -
Lapu8g01381 548 MobiDBLite consensus disorder prediction 266 350 - -
Lapu8g01381 548 MobiDBLite consensus disorder prediction 134 171 - -
Lapu8g01381 548 Pfam Helix-loop-helix DNA-binding domain 348 394 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01381 Lapu-Chr8 31082727 31087623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01381 7 515 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 33.078 2.99e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu8g01381 HLH 7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01381 K16189 - gmx:100811777 842.417