Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01360 ATGGTTTTGAAGGTTTTTCTCACTGTGGTTCTCCTTGTGATATGCTCCTGTGCTGTGGAAGCCTTTTCTAGGAATCGCGGTCACAATCTCAACCAAAATGGATCTTCTCTAGCTGCCATAAAGTTTCCTGATCATCCAAGCTTCAGTTCTGTCTCTTCTTCTGGGGACACTGATTGTAGCCTCCCGAGTTCTAAGGAACTCGGGCATTCTGGACCTACCATGACATCAGGTGAAGAAACCGATGAAGAGGGTGAGGCTTTTCCAGCACCAAAACCACACAACCAATTGGTGAAACTCCACTTGAAACACAGGTCAGGGAGCGAAGGTGCTGAGCCTAAACAATATGTGGTTGATTCCACCGTAAGGGATTTGACCAGAATTCAGAACCTTCACAGAAGGGTCATAGAGAAGAAGAATCAAAACACCATTTCAAGGCTGCAAAAGTCACAGGACCAACCAAAGCTGTCCCACGAGGCTGTGGTTGCTCCGGCAGCTTCGCCGGCAAGTGGGGTTTCCGGACAGCTTGTGGCAACGTTGGAATCTGGGGTGAGTCTTGGCTCTGGTGAGTACTTCATGGATGTGTTTGTGGGCACACCTCCTAAGCATTTCTCTCTCATACTTGATACTGGTAGTGACCTTAATTGGATTCAATGTGTTCCTTGCATTGCATGTTTTGAGCAAAGTGGGCCATACTATGACCCCAAAGATTCTAGTTCTTTTAGGAATATAAGCTGTCGTGATCCCCGGTGCCAACTGGTTTCATCCCCTGATCCACCTAGGCCTTGCAAAGGTGAGAATCAGAGTTGTCCCTACTTCTATTGGTATGGAGATGGTTCAAATACAACTGGGGATTTTGCATTGGAAACCTTTACCGTTAATCTCACCACTCCTTCTGGGGGGTCAGAGCTGAAGCATGTTGAGAATGTGATGTTTGGATGTGGTCATTGGAATAGGGGTCTCTTTCATGGGGCTGCTGGTTTGCTAGGTTTGGGGAGAGGACCATTGTCATTTGCTTCTCAGATGCAATCTCTCTATGGCCATTCCTTTTCCTATTGTCTTGTGGATAGAAATAGCAATGCAAGTGTGAGTAGCAAATTGATTTTTGGTGAGGACAAGGAGCTGCTCAGCCACCCCAATTTGAATTTCACTTCTTTTGCTGGTGCCAAAGAGGATTCAGTTGACACATTTTACTATGTCCAGATAAAGTCTGTTATGGTTGATGGTGAGGTGTTGAAGATACCAGAAGAGACTTGGCAGTTGTCAGCAGAAGGTGCTGGTGGTACCATAATTGATTCTGGCACCACATTAACATATTTTGCTGAACCTGCTTATGAGACTATCAGGGAGGCTTTTGTGAATAAGATTAAGGGCTATACACTCGTTGAAGGCCTTCCTCCTCTAAAGCCATGTTACAATGTGTCGGGAATTGACAAGATGGAGCTACCTGACTTTGGAATACTATTTGCAGATGGAGCAGTGTGGAATTTTCCTGTGGAGAATTACTTTATCCAGATTGATTCTGATATTGTTTGCTTGGCTATTTTGGGAACTTCTCGATCTGCCCTTTCAATAATTGGCAACTATCAGCAGCAGAATTTTCACATACTGTATGATATGAAGAAATCCAGACTTGGGTATGCACCAATGAAGTGTGCTGATTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCCACCGAATCCGATGAACATCCTAAAATCTACCGCATGAAACTCTGGGCCACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGTATTTCTTGAGAAAATTGAAGAAGGTCAAGAAAAGCAATGGGCAAATGCTGGCCATTAACGAGGTCAACACTATCACTCCCTAG 1860 0.4511 MVLKVFLTVVLLVICSCAVEAFSRNRGHNLNQNGSSLAAIKFPDHPSFSSVSSSGDTDCSLPSSKELGHSGPTMTSGEETDEEGEAFPAPKPHNQLVKLHLKHRSGSEGAEPKQYVVDSTVRDLTRIQNLHRRVIEKKNQNTISRLQKSQDQPKLSHEAVVAPAASPASGVSGQLVATLESGVSLGSGEYFMDVFVGTPPKHFSLILDTGSDLNWIQCVPCIACFEQSGPYYDPKDSSSFRNISCRDPRCQLVSSPDPPRPCKGENQSCPYFYWYGDGSNTTGDFALETFTVNLTTPSGGSELKHVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQMQSLYGHSFSYCLVDRNSNASVSSKLIFGEDKELLSHPNLNFTSFAGAKEDSVDTFYYVQIKSVMVDGEVLKIPEETWQLSAEGAGGTIIDSGTTLTYFAEPAYETIREAFVNKIKGYTLVEGLPPLKPCYNVSGIDKMELPDFGILFADGAVWNFPVENYFIQIDSDIVCLAILGTSRSALSIIGNYQQQNFHILYDMKKSRLGYAPMKCADFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEVNTITP* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01360 619 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 555 616 IPR023573 GO:0003735|GO:0005840|GO:0006412
Lapu8g01360 619 CDD pepsin_A_like_plant 189 551 IPR034161 -
Lapu8g01360 619 FunFam Eukaryotic aspartyl protease family protein 165 370 - -
Lapu8g01360 619 MobiDBLite consensus disorder prediction 49 77 - -
Lapu8g01360 619 FunFam 60S ribosomal protein L18a 549 619 - -
Lapu8g01360 619 Pfam Xylanase inhibitor N-terminal 190 369 IPR032861 -
Lapu8g01360 619 MobiDBLite consensus disorder prediction 49 91 - -
Lapu8g01360 619 Hamap 50S ribosomal protein L18Ae [rpl18a]. 554 617 IPR028877 -
Lapu8g01360 619 PRINTS Pepsin (A1) aspartic protease family signature 428 439 IPR001461 GO:0004190|GO:0006508
Lapu8g01360 619 PRINTS Pepsin (A1) aspartic protease family signature 196 216 IPR001461 GO:0004190|GO:0006508
Lapu8g01360 619 PRINTS Pepsin (A1) aspartic protease family signature 523 538 IPR001461 GO:0004190|GO:0006508
Lapu8g01360 619 Gene3D Acid Proteases 169 370 IPR021109 -
Lapu8g01360 619 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Lapu8g01360 619 FunFam Aspartyl protease family protein 371 554 - -
Lapu8g01360 619 PANTHER OS07G0603500 PROTEIN-RELATED 150 551 - -
Lapu8g01360 619 Pfam Xylanase inhibitor C-terminal 397 547 IPR032799 -
Lapu8g01360 619 SUPERFAMILY Acid proteases 182 554 IPR021109 -
Lapu8g01360 619 Gene3D Acid Proteases 371 554 IPR021109 -
Lapu8g01360 619 ProSiteProfiles Peptidase family A1 domain profile. 190 547 IPR033121 -
Lapu8g01360 619 Gene3D - 555 619 - -
Lapu8g01360 619 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 205 216 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01360 Lapu-Chr8 30898975 30906044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01360 554 619 Cytoplasmic Ribosomal Protein Gene Family AT3G14600 84.848 8.17e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01360 K22683 - gmx:100818203 868.226