LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu8g01350	ATGCAGGAGCCCCTTTTGAACTCTTGCTCCGGAGAAGAAGAAACAAACTCACCAAGTAGACCATCACCCAAGGAACTATCTGTCCATGGTCTTGATCTTGCCTCATCTCTATTCCAATCTAGTTCTTCTCTTATCACCAATGAAGATAAGAGTTCCTTCAACCTCGGAGCCAACTTGGCATACATGAAAGGAAGGATTATCCAACGTTCTCGTTCTGCGCCATCTTTATTATTTGTTGACACTGGGGTAGATTTTCAAGAGCCCTCTGAACACAAGTCATCAACTTTAATAGTTAGACTATCTTTTATTGGTGTTTTCTTGTATGTGGCAACTGGGGTAGCAGTGTACATGATTTCTGGGAGTTTCAGGGGCACTACCACTTTCAGGCCTTTAGATGCTGTATACTTTACAATGGTAACTCTCTGCACTATTGGGTATGGAGATATTGTTCCTGACTCCACTTTTACCAAAATCTTTACATGTGGTTTCATTTTGGTGGGTTTTGGATTTATTGGTTTTCTGCTGAATGTGTTGGTTGCATACATTTGCGATACACAAGAGGCATTCTTGTTGAGCATGATGGATGAGAATAGGTATAAGAAAATTCTCAGGACGTATATGGTTGACGAAGAGAAAAGAAGAATGAGGATAAGAACCAAAGTTTGTTTGGCTTTGGTTGTTGTCATTGGCTGCATTGCTATAGGAACAGTCACAATGCATTTTGTTGAGGACCTGAATTGGGATGACAGTATTTATCTCTCCGTTACTTCTGTTACAACGGTTGGTTATGGGGATTTTTCTATCAGAACAGTAGCCGGAAGATGCTTTGCTATTATATGGCTTTTGATAAGCACATTGGCGGTTGCCAGGGCCTTTATTTACCTCACTGAATATAGTATTCACAAGAGAAATCGTAACATGGCAAAATGGGTTCTTCAGAAGAAGATAACCTTGTCAGATTTAGCGGCTGCAGACCTTGATAATGATGGATCAATCAGCAAATCTGAATTTGTCATATACAAGCTTAAGCAAATGGGGAAGATTACAGAGTTAGACATTCTGCAAATAAGTAAACAATTTGATTCCTTGGAACATGGCGTGTATGGCAAGATTACTCTTGCTGACCTCATGGAAACTGTC	1140	0.4009	MQEPLLNSCSGEEETNSPSRPSPKELSVHGLDLASSLFQSSSSLITNEDKSSFNLGANLAYMKGRIIQRSRSAPSLLFVDTGVDFQEPSEHKSSTLIVRLSFIGVFLYVATGVAVYMISGSFRGTTTFRPLDAVYFTMVTLCTIGYGDIVPDSTFTKIFTCGFILVGFGFIGFLLNVLVAYICDTQEAFLLSMMDENRYKKILRTYMVDEEKRRMRIRTKVCLALVVVIGCIAIGTVTMHFVEDLNWDDSIYLSVTSVTTVGYGDFSIRTVAGRCFAIIWLLISTLAVARAFIYLTEYSIHKRNRNMAKWVLQKKITLSDLAAADLDNDGSISKSEFVIYKLKQMGKITELDILQISKQFDSLEHGVYGKITLADLMETV	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu8g01350	380	Gene3D	-	85	186	-	-
	Lapu8g01350	380	MobiDBLite	consensus disorder prediction	1	26	-	-
	Lapu8g01350	380	ProSitePatterns	EF-hand calcium-binding domain.	325	337	IPR018247	-
	Lapu8g01350	380	SUPERFAMILY	Voltage-gated potassium channels	194	315	-	-
	Lapu8g01350	380	PRINTS	Two pore domain K+ channel signature	259	268	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Lapu8g01350	380	PRINTS	Two pore domain K+ channel signature	139	167	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Lapu8g01350	380	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	131	353	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Lapu8g01350	380	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lapu8g01350	380	Gene3D	-	187	324	-	-
	Lapu8g01350	380	FunFam	Two-pore potassium channel 3	204	318	-	-
	Lapu8g01350	380	Pfam	Ion channel	227	292	IPR013099	-
	Lapu8g01350	380	Pfam	Ion channel	105	182	IPR013099	-
	Lapu8g01350	380	SUPERFAMILY	Voltage-gated potassium channels	93	182	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu8g01350	Lapu-Chr8	30823172	30831714	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu8g01350	60	378	Ion Channels	AT4G18160	48.765	6.76e-104	311

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu8g01350	K05389		-	gmx:100789639	607.06