Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01337 ATGGAGTTTCCTAACGAAGCAATATCAGAAGGGTCTTCTCAGAAGAAAACTGGAAGAGGGAAAATAGAGATCAAGCGGATCGAGAACACCACCAATAGGCAAGTTACCTTCTGCAAACGCCGCAACGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTCTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCAAGCCGTGGACGCCTTTATGAGTATGCCAACAACAGTGTTAGAGGTACTATCGATAGGTACAAAAAAGCATGTGCTGCTTCCTCAAATGCAGAATCCGTCTCTGAAGCTAATACACAGTTTTATCAGCAAGAATCATCCAAGTTAAAAAGACAAATCAGAGACATTCAAAATCTAAACAGGCACATCCTTGGTGAAGCTCTTAGTTCTCTGAGTCTAAAGGAATTAAAGAATCTCGAGAGTAGATTGGAGAAAGGTTTGAGCAGAGTTAGATCCAGAAAGCATGAAACATTGTTTGCGGATATCGAGTTCATGCAAAAGCGGGAAATAGAGCTGCAAAACCACAATAATTTTCTGCGAGCTAAGATAGCTGAACACGAGAGAGAACAACAACAACATATGACAGGAAGTGTGTGCGAGTCCTTACCACCTTCACAATCATATGACAGGAATTTCTTCCCTGTAAATCTCATAGATTCCAGTCATCAATACTCACGTCAAGACCAGACTGCTCTTCAACTTGTGTAA 720 0.4153 MEFPNEAISEGSSQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKACAASSNAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFLRAKIAEHEREQQQHMTGSVCESLPPSQSYDRNFFPVNLIDSSHQYSRQDQTALQLV* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01337 239 Gene3D - 29 97 IPR036879 GO:0003677|GO:0046983
Lapu8g01337 239 Coils Coil 137 157 - -
Lapu8g01337 239 MobiDBLite consensus disorder prediction 1 20 - -
Lapu8g01337 239 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Lapu8g01337 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 198 - -
Lapu8g01337 239 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Lapu8g01337 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Lapu8g01337 239 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Lapu8g01337 239 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu8g01337 239 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu8g01337 239 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Lapu8g01337 239 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Lapu8g01337 239 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Lapu8g01337 239 SUPERFAMILY SRF-like 18 93 IPR036879 GO:0003677|GO:0046983
Lapu8g01337 239 FunFam agamous-like MADS-box protein AGL11 29 112 - -
Lapu8g01337 239 Coils Coil 106 126 - -
Lapu8g01337 239 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Lapu8g01337 239 Coils Coil 173 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01337 Lapu-Chr8 30725885 30730029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01337 10 239 MADS-box Gene Family AT3G58780 68.750 1.85e-115 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu8g01337 K-box 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01337 K09264 - gmx:100792224 409.453