Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01311 ATGGTAGAAACAGTAGCTGCAACTTGTAAGCAACTTTGCATTGGCGGTTCTGTAGTTGAGCTATTCATGAAGGCTGTGGAGAGAGTTCTTTTTGCATTATTTATTTGCATTCTGGCACTAGGAGGGTCAATAGTAGGAACAATTGCAGGAGGCATAAAAGGGCAGACCACAGAAACTGGTTTTCTTGATGGGGCTGGCAAAGGAGCAATCACAGGAGCCATTGCAGCATTGGGATTGATAAATTTTGATGCTGTTGATGAGCCATTGTCCAAGTTTGCCCTGTTGAGAAGTTTATTAAATGGGAAAGTCTTTATGGAATGGATATGTCCAGCTGTGGCACAACTCTATCAGTTGCATGCAACTATTAACACACTGGAAACAATTTACCAAGAAGTATCAGACATTTATGATGTCAGGGGAGCAAGAGGGGTACCCCAGAATATAATTATGAAGCTTCCTTTTCAGCCATTCAACTCTATCAGAATGTCCAAATTATACAACGTGTCTTGCTGCTCAATTTGCTTCCAGGAGTTTGAAGATGGAGAATTGGTGAGGGTACTTCCAAAATGTAGCCACCTTTTTCACCTAGAATGCATAGACAAGTGGCTAGTCCAACAAGGATCATGTCCAATGTGCAGAACTTATGTTCCAGACCACATTCTTAGATAA 669 0.4141 MVETVAATCKQLCIGGSVVELFMKAVERVLFALFICILALGGSIVGTIAGGIKGQTTETGFLDGAGKGAITGAIAALGLINFDAVDEPLSKFALLRSLLNGKVFMEWICPAVAQLYQLHATINTLETIYQEVSDIYDVRGARGVPQNIIMKLPFQPFNSIRMSKLYNVSCCSICFQEFEDGELVRVLPKCSHLFHLECIDKWLVQQGSCPMCRTYVPDHILR* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01311 222 SMART ring_2 171 212 IPR001841 -
Lapu8g01311 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 219 IPR013083 -
Lapu8g01311 222 Pfam Ring finger domain 171 213 IPR001841 -
Lapu8g01311 222 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Lapu8g01311 222 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 22 214 IPR044523 -
Lapu8g01311 222 SUPERFAMILY RING/U-box 170 217 - -
Lapu8g01311 222 CDD RING-H2_EL5-like 170 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01311 Lapu-Chr8 30489811 30492219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01311 32 216 C3H Transcription Factor Family AT5G66070 34.872 1.56e-36 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01311 - K19041 gmx:100305612 367.851