Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01301 ATGGATGAGGAGGGGTGGAAGGGGAGGAGATCCTCCGAGCCACGGCCCTGCACGGAGTGCGGCAAGAAGTTCTGGTCTTGGAAGGCACTCTTCGGCCACATGCGATGCCACCCTGAGCGTCAGTGGAGAGGGATAAACCCTCCCCCAAACGCCAGAAGACATCAAAATCCACAGCAACAACGACAACAGACGACGATGATAATGACAGAGGAAGACCATGAGGTGGCTGCCTGTTTGCTTCTGCTTGCCAATTCCAACAACATGTGCAGCAAAGAGAAAGAGAAAGGGAAAGAGAAAGAGAAAGAGGAAGATGGTGAGCAGGGGCAGTTCGAGTGCTCCAGTTGCAACAGGGTGTTCGGGTCGCACCAGGCTCTTGGAGGGCACCGTGCGAGTCACAAGAACGTGAAGGGGTGTTTCGCGAACACGGGTAATGTAGGCACAGGCTTATGCTTAGGAATGGGAAGCAACGAGAAGTGCGAGGAGGAGAAGGTTGGGATGAGTGGTGATGGGCACAAGTGCAGCATATGCATGAGGGTGTTCTCCACAGGGCAGGCACTGGGTGGGCACAAGAGGTGTCATTGGGAGAATGTGAAGGGCGACAACCTTCTCCTCCTTCACTCACCTGACTCCTCCCTCCACTTCAATCCTCCTCCCCTCACTCTCGATCTGAGGTTGGGTCTCTAG 684 0.5497 MDEEGWKGRRSSEPRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNARRHQNPQQQRQQTTMIMTEEDHEVAACLLLLANSNNMCSKEKEKGKEKEKEEDGEQGQFECSSCNRVFGSHQALGGHRASHKNVKGCFANTGNVGTGLCLGMGSNEKCEEEKVGMSGDGHKCSICMRVFSTGQALGGHKRCHWENVKGDNLLLLHSPDSSLHFNPPPLTLDLRLGL* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01301 227 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Lapu8g01301 227 SUPERFAMILY beta-beta-alpha zinc fingers 169 195 IPR036236 -
Lapu8g01301 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 42 IPR013087 -
Lapu8g01301 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 193 IPR013087 -
Lapu8g01301 227 SUPERFAMILY beta-beta-alpha zinc fingers 14 132 IPR036236 -
Lapu8g01301 227 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 12 219 - -
Lapu8g01301 227 SMART c2h2final6 110 132 IPR013087 -
Lapu8g01301 227 SMART c2h2final6 171 193 IPR013087 -
Lapu8g01301 227 SMART c2h2final6 15 37 IPR013087 -
Lapu8g01301 227 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Lapu8g01301 227 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Lapu8g01301 227 Gene3D Classic Zinc Finger 82 197 - -
Lapu8g01301 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Lapu8g01301 227 Pfam C2H2-type zinc finger 110 133 - -
Lapu8g01301 227 Pfam C2H2-type zinc finger 16 39 - -
Lapu8g01301 227 Pfam C2H2-type zinc finger 171 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01301 Lapu-Chr8 30435291 30435974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01301 15 227 C2H2 Transcription Factor Family AT4G35280 49.130 2.10e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu8g01301 zf-C2H2_6 6.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01301 - - vun:114195192 336.65