Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01276 ATGGTTGAAGCTGTGGGAATCGAAGAAAGGCCAAAATTCAGAGATATTAGACGTTATTTCTGCGAGTACTGCGGTATCTGCAGATCCAAAAAAACCCTAATTACCTCTCACATCAATTCCAACCACAAGGAAGAGGTTGAAAAAGCAAGAAAAGAAAGAGATCCTGAAGCAGAGCCTTCGAAATCCAACACCTGCGAGGATTGTGGTGTCACTTTCAAGAAACACGCATATTTGTTGCAGCACATGCGAAATTCTAAAATCTTTGGAAAATTATGGATTAATAGTGTGAAGCATTGGATCCCAGACAAGGAACTCCAAAATGCACGAGGCAGCGAGTTTAGACTTGATGGATTAGTATCAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCAGTCACGCTCTTTGAATTTGAGGTTGGCAAGGCCGTTTGTGTGTGCTGTTGATGATTGTCAGGCGAGTTACAGAAGGAAGGACCACCTGACTAGGCACCTTCTACTACATGAAGGGAAGACTTTCAAGTGCCCTGTTGTGAATTGCAACATTGTGTTCTCTTTGCAAAGCAATATGAAAAGACACGTTGAGGAGATTCACGATGAGAGCTCTACTGCTACAGACAAAAGTCACAAAGAACATGCGTGTCCAGAGATTGGCTGTGGAAAGGTTTTCAGATTTGCTTCTCAGCTAAAAAAGCATGAAGATTCTCATGTTAAGCTGGAGTCAGTAGATGTGGTGTGCTTAGAGCCTGGTTGCATGAAGCATTTTACTAATGTCCAGTGCCTTAAAGTCCATGTGAAGTCCTGCCATCAATATATGACCTGTGACATTTGTGGGTCTAAGCAACTGAAGAAGAATATTAAGCGTCACCTTCGTTCACATGAGGCTGACAGCAGTTCCTCGGAGACCTTTCAATGCGAGTTTAAGGGTTGTACCTGCACATTCTCAAAAAAATCTAATCTTGATAAGCATAAGAAGGCTGTGCACCTTAAAGAAAAACCTTTTTTGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGGGATAATCATGAAAAAACTGCTAAACATGTTTATACCGTTGTAAGTTCTCTTTTTTTTCTTTGGGGGATTTTGAAGAAGCTGATGAAGAGTTCAGATCAAGGCCGAGAGGAGGGCGGAAGAGAAAATGTCCGACTGTTGAGATGTTAA 1206 0.4229 MVEAVGIEERPKFRDIRRYFCEYCGICRSKKTLITSHINSNHKEEVEKARKERDPEAEPSKSNTCEDCGVTFKKHAYLLQHMRNSKIFGKLWINSVKHWIPDKELQNARGSEFRLDGLVSGRETSCEAPSRMPQSRSLNLRLARPFVCAVDDCQASYRRKDHLTRHLLLHEGKTFKCPVVNCNIVFSLQSNMKRHVEEIHDESSTATDKSHKEHACPEIGCGKVFRFASQLKKHEDSHVKLESVDVVCLEPGCMKHFTNVQCLKVHVKSCHQYMTCDICGSKQLKKNIKRHLRSHEADSSSSETFQCEFKGCTCTFSKKSNLDKHKKAVHLKEKPFLCGFPDCGMRFAYKHVRDNHEKTAKHVYTVVSSLFFLWGILKKLMKSSDQGREEGGRENVRLLRC* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01276 401 MobiDBLite consensus disorder prediction 40 63 - -
Lapu8g01276 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 205 IPR013087 -
Lapu8g01276 401 ProSitePatterns Zinc finger C2H2 type domain signature. 177 200 IPR013087 -
Lapu8g01276 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 243 IPR013087 -
Lapu8g01276 401 SUPERFAMILY beta-beta-alpha zinc fingers 144 172 IPR036236 -
Lapu8g01276 401 SMART c2h2final6 214 238 IPR013087 -
Lapu8g01276 401 SMART c2h2final6 246 271 IPR013087 -
Lapu8g01276 401 SMART c2h2final6 175 200 IPR013087 -
Lapu8g01276 401 SMART c2h2final6 63 83 IPR013087 -
Lapu8g01276 401 SMART c2h2final6 274 295 IPR013087 -
Lapu8g01276 401 SMART c2h2final6 19 42 IPR013087 -
Lapu8g01276 401 SMART c2h2final6 336 362 IPR013087 -
Lapu8g01276 401 SMART c2h2final6 305 330 IPR013087 -
Lapu8g01276 401 SMART c2h2final6 146 170 IPR013087 -
Lapu8g01276 401 Gene3D Classic Zinc Finger 300 366 - -
Lapu8g01276 401 Gene3D Classic Zinc Finger 211 296 - -
Lapu8g01276 401 Pfam Zinc finger, C2H2 type 175 200 IPR013087 -
Lapu8g01276 401 Pfam Zinc finger, C2H2 type 215 238 IPR013087 -
Lapu8g01276 401 Pfam Zinc finger, C2H2 type 64 83 IPR013087 -
Lapu8g01276 401 Pfam Zinc finger, C2H2 type 146 170 IPR013087 -
Lapu8g01276 401 ProSitePatterns Zinc finger C2H2 type domain signature. 307 330 IPR013087 -
Lapu8g01276 401 Gene3D Classic Zinc Finger 6 87 - -
Lapu8g01276 401 SUPERFAMILY beta-beta-alpha zinc fingers 173 201 IPR036236 -
Lapu8g01276 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 175 IPR013087 -
Lapu8g01276 401 SUPERFAMILY beta-beta-alpha zinc fingers 289 344 IPR036236 -
Lapu8g01276 401 ProSitePatterns Zinc finger C2H2 type domain signature. 338 362 IPR013087 -
Lapu8g01276 401 Gene3D Classic Zinc Finger 172 210 - -
Lapu8g01276 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 305 335 IPR013087 -
Lapu8g01276 401 ProSitePatterns Zinc finger C2H2 type domain signature. 216 238 IPR013087 -
Lapu8g01276 401 ProSitePatterns Zinc finger C2H2 type domain signature. 248 271 IPR013087 -
Lapu8g01276 401 Gene3D Classic Zinc Finger 141 171 - -
Lapu8g01276 401 MobiDBLite consensus disorder prediction 40 61 - -
Lapu8g01276 401 ProSitePatterns Zinc finger C2H2 type domain signature. 148 170 IPR013087 -
Lapu8g01276 401 PANTHER ZINC FINGER PROTEIN 8 360 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01276 142 389 C2H2 Transcription Factor Family AT1G72050 48.137 2.78e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu8g01276 zf-C2H2 0.0087 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01276 K09191 - gmx:100801812 434.491