LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu8g01275	ATGGAACCCTCTTCCAATCATGCCATTGCTAATCCTTCCTCACATCCAATCATGTCCTTTAGAGGGACTCCACTTCTAATGGATGCCCTTGATTTCTTCCCTCAGAAGACTAAAGAGATTGAAGATGACGACGACGACATTGATCATCATCAAACACTCCAGTTTCATGTAGATACCAGTTTGGATCTCCTTTCAAAGAATAGCGGTGGCAACAGATCAATCGAAGAAAATGATGCATTGGAAAATATGGATGACAAGAGCAAGTTTGTCGCTTTGGTAACTGAATTGCACCAAATGAATGCTGAAAATCAAAGATTAAGAGAGTTGGTTGATCAGATGAACAATAACTACAATGCCCTACGCATGCAACTTATCAAGCTAACGCAGACGCAGCATAACCAAGGGAACAATGGAGTGATTGGAGAGAAAGAAGACATGGTTCCAAGGTCATTCTTAGACATGGCTGTCGCTGAAAAGGATGAGGCTTCCCAGCAATCCTCAGAGGAAAAACACAGAGAAAGCAAAAGCGTGGTTGATTTGATGCATCAGTGTAAGGGTAATGACAAAGACATTGAAGATAAGTTGGATTGTGGAAGGGAGAGCTCAAAAGCTAGAATGGAAGGTGACCAAGAACTTTCTAACAAAGTTCCTAAATTGGATCAAACTTCAGAAACCTTGTCAATGATCAAGAAAGCTCGTGTGTCAGTTCGAGCAAGATCAGACTCAACAATGATTGCAGATGGATGCCAATGGCGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCTTGTCCAAGGGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGCAAACAAGTACAAAGGTGTGCAGAAGATCGAAGTGTGCTGATCACTACATATGAAGGGCAGCATAACCATCCACTGCCTCCCACAGCTCAAGCAATGGCCTCCACCACATCTGCAGCTGCTTCAATGCTTCTTTCTGGATCAATGCCAAGCTCAGATGGCCTAATCAATCCAACCATATTAGAAAGTGCTTCACTTCCCTGCTCCCAAAACATGGCAACTCTATCTGCCTCAGCCCCATTTCCCACCATCACACTGGATCTCACTCAAAATGCTACCAACTCCTCACAGCTACAAAGGGAACCACAGAACCAACTTAGCCTCCTCTCTCCCCTTTTGGCTCATAAGTTTATGTCAGTTCCAAAAATATTTGGACAGTCACTGTGTGATCAAACTAAGCTTGCTGGCTTACATGAGTCTCAGGGAATGGACACAGCTCCATCATTTGCTAACTCACTTAATGCAGCTACTGCTGCTATCACAGCAGACCCCAATTTCACTGCAGCTCTTGTCGCAGCTATAACATCTGTCATGGGGAGTTCACATTCAAACACCAGTGGCACCAGTAATACAACTGGGGATGACCAGTGCAATAATAATGCATAA	1443	0.4394	MEPSSNHAIANPSSHPIMSFRGTPLLMDALDFFPQKTKEIEDDDDDIDHHQTLQFHVDTSLDLLSKNSGGNRSIEENDALENMDDKSKFVALVTELHQMNAENQRLRELVDQMNNNYNALRMQLIKLTQTQHNQGNNGVIGEKEDMVPRSFLDMAVAEKDEASQQSSEEKHRESKSVVDLMHQCKGNDKDIEDKLDCGRESSKARMEGDQELSNKVPKLDQTSETLSMIKKARVSVRARSDSTMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPTILESASLPCSQNMATLSASAPFPTITLDLTQNATNSSQLQREPQNQLSLLSPLLAHKFMSVPKIFGQSLCDQTKLAGLHESQGMDTAPSFANSLNAATAAITADPNFTAALVAAITSVMGSSHSNTSGTSNTTGDDQCNNNA*	481

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lapu8g01275	480	ProSiteProfiles	WRKY domain profile.	240	306	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Lapu8g01275	480	Coils	Coil	96	130	-	-
Lapu8g01275	480	MobiDBLite	consensus disorder prediction	158	183	-	-
Lapu8g01275	480	SMART	WRKY_cls	245	305	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Lapu8g01275	480	MobiDBLite	consensus disorder prediction	162	183	-	-
Lapu8g01275	480	MobiDBLite	consensus disorder prediction	458	480	-	-
Lapu8g01275	480	SUPERFAMILY	WRKY DNA-binding domain	238	306	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Lapu8g01275	480	Gene3D	WRKY domain	230	307	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Lapu8g01275	480	FunFam	probable WRKY transcription factor 31	230	307	-	-
Lapu8g01275	480	Pfam	WRKY DNA -binding domain	247	304	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu8g01275	Lapu-Chr8	30232100	30235027	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu8g01275	30	466	WRKY Transcription Factor Family	AT1G62300	46.667	3.94e-111	338

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lapu8g01275		WRKY	1.5e-24	CL0274

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu8g01275	-		-	vum:124848283	753.436

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