Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01270 ATGCGGAAGGGAAGAGGAGGGGCTGCGTCCGTGGTCACGGCGGCGGCGGCCGCTGCCAATGGATCCCTTTTAAAGGAGCCTCGGTACCGGGGCGTCAGGAAGAGACCGTGGGGGAGGTTCGCTGCGGAGATCAGAGACCCGTTGAAGAAAGCCAGGGTTTGGTTGGGAACCTTCGATTCTGCTGAGGAAGCTGCTCGAGCCTACGACGCCGCCGCTCGGACTCTCCGAGGTCCCAAGACTAAAACAAATTTCCCTCTCTCACACCCTTTTTGCTATCCGCACCCCACCACCAATCCTCTCTTTTACGCGGGTTTCCACGACAACAGCCACAACCACAACCACAACAACCTTAACAACCCGCAGAGACCCACCTCAAGTGGTATGAGTAGCACCGTCGAGTCTTTCAGTGGGCCCCGCCCTCCCACAGCCGCCGCTACTGCTACGACGCCGTTTTTGACCACCACGCGGAGATACCCACGCACTCCCCCTCTCGTCCCGGAAGACTGCCATAGCGACTGCGACTCCTCCTCCTCCGTCGTTGACGACGGTGACAACATCGTCTCTTCGTCGTTCCGCCCTCCCCTGCCTTTCGATCTCAACGCCCTGCCATTGGACGACGCTGCCGCAGATGACGATCTCCGCTGCACCGCGCTCTGTCTCTGA 663 0.6033 MRKGRGGAASVVTAAAAAANGSLLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARTLRGPKTKTNFPLSHPFCYPHPTTNPLFYAGFHDNSHNHNHNNLNNPQRPTSSGMSSTVESFSGPRPPTAAATATTPFLTTTRRYPRTPPLVPEDCHSDCDSSSSVVDDGDNIVSSSFRPPLPFDLNALPLDDAAADDDLRCTALCL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01270 220 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Lapu8g01270 220 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Lapu8g01270 220 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Lapu8g01270 220 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Lapu8g01270 220 MobiDBLite consensus disorder prediction 111 147 - -
Lapu8g01270 220 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Lapu8g01270 220 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Lapu8g01270 220 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Lapu8g01270 220 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Lapu8g01270 220 FunFam Ethylene-responsive transcription factor 2 28 86 - -
Lapu8g01270 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01270 Lapu-Chr8 30193517 30194653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01270 1 220 AP2-EREBP Transcription Factor Family AT1G50640 58.898 4.58e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu8g01270 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01270 K09286 - gmx:100803943 248.054