LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu8g01263	ATGAGTTTTCTTCTAATCTTGTTGATTAGTTGTTTCTTCTGTCTTGGTAAGGCCACAGACTGTGGTGGGAAGACGGTTACAAAATCAATCGTTGTTGATCAACAAGGCAAAGCAGCATTTAGAACAATACAAGAGGCCATTGATTCTGTAAAAAGCAACAATGATCAATGGGTCAAGATTCAAATAAAAGCCGGCTTATACATAGGGAGGGTTACCATTCCCTTGGAAAAACCATGCATAATTTTAGAAGGAGAGAGTAGCGCGACAACAACCATTAGTTACTGGGACCACCTAGCAATAAGTAATAACGCTTCATTCACTTCTTCAGCACCCAATGTGATTGCAACTGGCATTACTTTCAAGAACTCATACAATGTGGCGAATAAAATATATGAATCGAAAGATGTGGGAAGCGAACCAATTGAACCAGCAAACGCAGCAAGAATATACGGAGACAAATCTTTCTTCTATAATTGTAGTTTTGTAGGTTATCAAGACACTTTATTTGATGCATACGGACGTCACTACTATAAAGATTGTCACATTCAAGGTGAAATCGACTTTATATTTGGTTCTGCACAATCTTATTATGAGAATTGTTGGCTCAATGCTGTGGGGAGAGATCCAAATTTACCAGGCTTTGTCACAGCTCAGGGACGAAAAATAGCAGATGATCCAGGAGGTTTTGTATTTGAAGGAGGTTCGTTGACAGGGAATGGTAAAGTGAATTTAGGAAGAGCATGGCGAACCTATTCCAGAGTCATATTTCATAAAACATATCTTTCTTCCATTGTTACTCCTCAAGGATGGGTTGCTTTTAATGCCACTGGCAATGAGTAA	840	0.3881	MSFLLILLISCFFCLGKATDCGGKTVTKSIVVDQQGKAAFRTIQEAIDSVKSNNDQWVKIQIKAGLYIGRVTIPLEKPCIILEGESSATTTISYWDHLAISNNASFTSSAPNVIATGITFKNSYNVANKIYESKDVGSEPIEPANAARIYGDKSFFYNCSFVGYQDTLFDAYGRHYYKDCHIQGEIDFIFGSAQSYYENCWLNAVGRDPNLPGFVTAQGRKIADDPGGFVFEGGSLTGNGKVNLGRAWRTYSRVIFHKTYLSSIVTPQGWVAFNATGNE*	280

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu8g01263	279	SUPERFAMILY	Pectin lyase-like	27	276	IPR011050	-
	Lapu8g01263	279	Gene3D	-	23	279	IPR012334	-
	Lapu8g01263	279	Pfam	Pectinesterase	30	275	IPR000070	GO:0030599\|GO:0042545
	Lapu8g01263	279	PANTHER	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	23	277	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu8g01263	Lapu-Chr8	30154668	30156139	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu8g01263	2	279	Carbohydrate Esterase	AT2G19150	44.326	4.05e-73	224

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu8g01263	-		-	var:108336510	405.986