Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01250 ATGGAGACGGAGGAAGAGCTCGTCCCCGATCCCAAACCGGAGGAGCAGTCCTTGCCGCTTCAGAACGGGGACTCTGATGAGCGCTGCGCCAAGAAGCCCAAGGTTGACGCAGACGCCGAATTGAAGAGAGTGGCGGAGATTGTCCTCGTTCTCTCTACCATGGCCACGGTGCGTGCGGGGAGGAAGCCCTCCGACGCTGAGGTCGAGCTCATGAGAGAGGCACGTGCCAAGCTCGCCAGCCTCTGTCAGGGTTTGGCTCCCAAGGATATTGTAGCCAGAGAAGCAATTGGCACCGTCATCGAGGATCTTGGATTGAACTCCAAGCTTAAGGACCAGAGGCTAGGGTTTCGAACTCCCAAGATGTCTATTGCCGAGAGGTATTCCCATGCTAAGTGGAAGATGGAGGAAGCAAAGAAGTTTTCTGCACCTTCTACAACACATACATCTCAGCCCTTACAACCAAACATTGGTGGACCTGTTGATAATCGTGTGCCATCACATGTTGTTCGAATTTTCCCTTCTGATAAATCAAGCCAGCCAGCAATCCCTTCTATGGGTACAGTAGTGTCTATTCCTCCCCATGTTTCTGCAGGATCTTCTGCAGTATTGCAATACCAGGCAACTGGAAATGAAGCAAGACCACCTGTCGTTTCTGGTGTGATGCCTAGCGGTCACTTGGGGAGAAATTCATCTTCCTTAGTATTGCCCAAAGTTGAACATCCTCAGTTCAAAGTTGATGGAGGATCAAATGGGTCTTCTTATATGCTGCAAGTCCAAGCAAATTCATCAGCGCACCAACCTTTGGTGAATGCTCCGACATGGTCTATACAGACTCAAGCTGCTTCATTAGCAAGAACTGCATCAGAAAACAACGTGCCTGCTTCTAACTCTGTGAAGGCTGAAGGAACATCTGACGCAAACGTATCAAGGGCAGGGCCTCAAATAACAACAGATCAGAGCTTTAGACCGTTTATCACTCAAACAGCTTCTGTAAATTTGCCTAGTGTGCACCAGCCATTGCAGGCCACGAACATTGTTCAGCCTCCTTTGATTCCTAGTCACACTGACATTGCAAAGGTTGTCCAGAAAGTGTTACAACCAAAACATCCCAGCCATCCCACTTGGATTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAGATGTGTGAGCTCAGTGTTCATGAGGTTGATACTGTACTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGTCTGCAGCCCTCGGTCTTGAGAGGAATTCATAACAGAGTTGATTGGCACTGTATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGCCGTGTCATGAGATCCTCAAACACACCACCAAAATTACCCTCTAATTCCGGTGGTATTCAAGCATGTTCTGAGAATAAAGCAGAGAACATAGAACCAAAGGTCCTGCAGATGGTAACAAATGGGAGTGCTGTTCCAACTGTTGCCAGTGTCAATCACAATGTTGAGGTGCCATGTTACTCAAAGATCCCTGATACCAAAGCTATTCAAGGGATTGGCATTTCGTCCAGCATTGAAGCTATAGATAAGAAGTCTGATCCAAGCAACTCTATGAAATCTCTTAGTGCAGCTTCTAGTCCTTCTACTGGCTTGCTTGGTGAATGCTCTACTAAACAAATAAATTCTAAGGTTTTGACCAGTAAAGAGACTTCAGAATGTGAGTCTCTTCCTAAATTATCTGAGCTGGCTAAATGTGAAAGTATGCAATCATCACAAGATTTTCAAGTGGAACAGACAATGCCAGAAGAAAATATGGAAGTTTCATCAGATAAACTCATTGATGTTAACATTATGAATAATAATCAAAAAGACTCTCTTGGAGGGGAAAATTTAACTTACGATGTCAAGCGCGATGACCAAGATGCTGCGCATGCAAACATTGTTGGAATTTCTGAAACTAATACTGAAGGTAGACAGCACCCTGCATTATCTTCAGATAGTTCACATGCTGTAGAATGGATTGGTGATGTAGTAGAACTTGTAGATGGGAAATTTTTTTACCAATCTTGTTGCGTTGATGGAGTAACATATAGGCTACAGGGTCATGCTCTTTTCCCCACCAGCAATGGAAAACTAGCCCCTTCTAAACTCCAGTCTATGTGGGAAGATTGCAAAACTGGGTTAAAGTGGGTTAAGGTGACAAAGTGCTACTTTCCTGATGATTTGCCTGGGAATATTGGTCATCCGTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGACTAGCTCTATTCAAGGTCCATGTGAAGTCCTTCCGTCTGATAAATTTAAACAAGAAAATGACAGGCGATGTCAATTAGGAATTGAGGAAAGTACCAGAATACAGCCCATTTTCCTTTGCAGGTGGTTTTATGATGAATTCAAAAAGTTATTTCAACCTGTAATCAGTTGA 2478 0.4411 METEEELVPDPKPEEQSLPLQNGDSDERCAKKPKVDADAELKRVAEIVLVLSTMATVRAGRKPSDAEVELMREARAKLASLCQGLAPKDIVAREAIGTVIEDLGLNSKLKDQRLGFRTPKMSIAERYSHAKWKMEEAKKFSAPSTTHTSQPLQPNIGGPVDNRVPSHVVRIFPSDKSSQPAIPSMGTVVSIPPHVSAGSSAVLQYQATGNEARPPVVSGVMPSGHLGRNSSSLVLPKVEHPQFKVDGGSNGSSYMLQVQANSSAHQPLVNAPTWSIQTQAASLARTASENNVPASNSVKAEGTSDANVSRAGPQITTDQSFRPFITQTASVNLPSVHQPLQATNIVQPPLIPSHTDIAKVVQKVLQPKHPSHPTWIPPSRDYMNKALTCQMCELSVHEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNSGGIQACSENKAENIEPKVLQMVTNGSAVPTVASVNHNVEVPCYSKIPDTKAIQGIGISSSIEAIDKKSDPSNSMKSLSAASSPSTGLLGECSTKQINSKVLTSKETSECESLPKLSELAKCESMQSSQDFQVEQTMPEENMEVSSDKLIDVNIMNNNQKDSLGGENLTYDVKRDDQDAAHANIVGISETNTEGRQHPALSSDSSHAVEWIGDVVELVDGKFFYQSCCVDGVTYRLQGHALFPTSNGKLAPSKLQSMWEDCKTGLKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRTEMTSSIQGPCEVLPSDKFKQENDRRCQLGIEESTRIQPIFLCRWFYDEFKKLFQPVIS* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01250 825 Gene3D - 676 824 IPR043151 -
Lapu8g01250 825 CDD BAH 696 819 - -
Lapu8g01250 825 ProSiteProfiles BAH domain profile. 697 824 IPR001025 GO:0003682
Lapu8g01250 825 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 22 823 - -
Lapu8g01250 825 MobiDBLite consensus disorder prediction 141 160 - -
Lapu8g01250 825 MobiDBLite consensus disorder prediction 532 554 - -
Lapu8g01250 825 CDD PHD_SF 388 436 - -
Lapu8g01250 825 Pfam PHD-finger 389 437 IPR019787 -
Lapu8g01250 825 SUPERFAMILY FYVE/PHD zinc finger 379 444 IPR011011 -
Lapu8g01250 825 Gene3D - 314 439 - -
Lapu8g01250 825 SMART PHD_3 388 437 IPR001965 -
Lapu8g01250 825 MobiDBLite consensus disorder prediction 287 313 - -
Lapu8g01250 825 ProSiteProfiles Zinc finger PHD-type profile. 386 439 IPR019787 -
Lapu8g01250 825 ProSitePatterns Zinc finger PHD-type signature. 389 436 IPR019786 -
Lapu8g01250 825 MobiDBLite consensus disorder prediction 141 156 - -
Lapu8g01250 825 MobiDBLite consensus disorder prediction 1 35 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu8g01250 PHD 1.5e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01250 - - gmx:100807139 1395.56