Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu8g01247 | ATGGCATCTTCTTCAAACTCATGGATGAAGGAATATAATGAAGCAGTGAAACTTGCTGATGATATCAGTGGTATGATTTCTGAGCAGAGTTCATTTCATGCATCTGGACCAGAAATCCAGCGTCATTCATCTGCTACAAGGAGGAAGATTACTATATTGTGTACCCGGCTTGATAGCTTGCAATCCCTACTGTCCAAGCTTCCTGGAAAGCAGCCCATATCTGAGAAGGAGATGAATCGTCGTAAGGACATGCTCGCAAGTTTGAGATCAAAAGTTAATCAAATGGCTTCCACATTGAACATGTCTAACTTTGCAAATAGAGATAGTTTGCTTGGACCAGAAGGAAAACCAGATGCTATGGCCAGAACTGTTGGCTTGGACAACAATGGACTTGTTGGATTTCAACGGCAAATTATGAAAGAACAAGACGAGGGCCTTGAGCAATTGGAAGAGACTATAGCAAGCACAAAACATATTGCTTTGGCAGTGAATGAAGAGCTGGGTCTACACACCAGACTCATTGATGACTTGGACCAGCATGTAGATGTCACAGATTCTCGGCTTAGGCGGGTGCAGAAGAACTTAGCAGTTTTAAATAAGAGAACCAAGGGTGGTTGTTCCTGCCTGTCCATGCTTTTATCAGTGGTTGGTATAGTGCTTTTGGTTGTTGTCATTTGGCTATTGGTCAAATATTTGTGA | 699 | 0.4235 | MASSSNSWMKEYNEAVKLADDISGMISEQSSFHASGPEIQRHSSATRRKITILCTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLASLRSKVNQMASTLNMSNFANRDSLLGPEGKPDAMARTVGLDNNGLVGFQRQIMKEQDEGLEQLEETIASTKHIALAVNEELGLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLSMLLSVVGIVLLVVVIWLLVKYL* | 233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu8g01247 | 232 | CDD | SNARE_Qc | 139 | 196 | - | - | |
| Lapu8g01247 | 232 | SMART | tSNARE_6 | 131 | 198 | IPR000727 | - | |
| Lapu8g01247 | 232 | SUPERFAMILY | SNARE fusion complex | 127 | 197 | - | - | |
| Lapu8g01247 | 232 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 136 | 198 | IPR000727 | - | |
| Lapu8g01247 | 232 | PANTHER | SYNTAXIN | 34 | 219 | IPR045242 | - | |
| Lapu8g01247 | 232 | Gene3D | - | 138 | 200 | - | - | |
| Lapu8g01247 | 232 | Coils | Coil | 146 | 166 | - | - | |
| Lapu8g01247 | 232 | FunFam | syntaxin-51 isoform X2 | 138 | 200 | - | - | |
| Lapu8g01247 | 232 | Pfam | SNARE domain | 173 | 224 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu8g01247 | Lapu-Chr8 | 30045142 | 30048001 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu8g01247 | 1 | 232 | SNARE and Associated Proteins | AT1G16240 | 72.103 | 7.00e-123 | 346 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu8g01247 | K08503 | - | gmx:100782666 | 372.089 |