Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01229 ATGGACGCCTCCGCTGCCTCCACCTCCGCCGAGCCCAGCCCGAGTTCGGAGCTCCGGCTCAACGGGGCATCCGAGGATCCGAATCGAACTGGGTCGAGTCAGAATTCGACGGCGAGGTACAAGCTAATTGCACCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACGATTCCTCCGGGGCTGAGTCCGACGTCGTTTCTGGAATCACCGGTTCTTCTTTCCAACATGAAGGTGGAGTCTTCACCAACTACAGGGTCCCTCCGCAAGCTTCAACAGACAGTACATGGTTCTATGACTTCTGCTGCCTCTGCCACATTTGCAGTAACAACTGCATGCTTCAATACCAACACTGTTGATGACAGGAAATCAAGCTTCTTTGAGTTTAAACCACTCAACAGGTTGAATATGGTTCCTGCAGACTTCAATAACCATGTTATCAAACAATCAGCTCAAGCAGAAGGTATAGGAAAAGCTCAATCATTTGCTTCCTCACCATTAGTTGAAAGTGAGATAGCAGTTCCTACTAACGAATTAAGTCTATCATCACCTATACAAATGGTTAGTTCTAGTCCTAGTGCTCCTGTTGATGTTGATATGGATGACATTAACCACAAAGGCAACACATCTACTGGTCTTCAAGCATCACATGTTGAGGTTAGAGGCAATGGACTTTCAGTTGCAGCTGAAAAAACATCTGATGATGGATACAATTGGCGAAAATACGGGCAAAAACTTGTTAAAGGAAGTGAATTTCCACGCAGTTATTATAAATGTACACATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATTACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCTGCCGATACTCCACTGGTACTATTATGTCTGTTCAAGGAGAGAGGTCCGATAAGGCTTCTTCTTTGGCTGGCCTAGATGACAAAGTATCCGCTATGTATAGTCAGTTGTCCCATGCTGCTGAGCCCAACAGTACTTCTGAGCCATCACCTATAGCAACAAATGATGATGGTTTAGAAGGTGTCGGGTTTGTGTCAAATAGGATTAGTGATAATGCTGATGATGATGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGTTGACATCACTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTTTGAGTGAGGTTGATATATTGGATGATGGGTATCGCTGGCGTAAGTATGGCCAAAAGGTGGTGAGAGGCAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCGGGTTGCCCTGTCAGAAAACATGTGGAGAGGGCATCTCATGATCCAAAAGCAGTGATAACCACTTATGAGGGTAAACACAATCATGACGTACCAGCTGCTAGGAATAGCAGCCATGACATGGCAGTAGCTGCCGCTGGACAGACAAGAATTAAGTTAGAAGAAAGTGATACCATTAGCCTTGACCTTGGGATGGGCATTAGCTCAGCTGCTGAACATAGATCAAACGCACAAGGGAAAACAATGCACTCTGAGTTTGGGAACACTCAAACTCACACCAGCAATTCCAATTTCAAGTTTGTTCATACTACCCCTGCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCTAATCCCTATGGTTCTAGAGACAATAGGAGTGATGGTCCAGCTTTAAACCATGCCTCGTATCCTTGCCCACAGAGCATGGGAAGAATACTAATGGGTCCATAA 1764 0.449 MDASAASTSAEPSPSSELRLNGASEDPNRTGSSQNSTARYKLIAPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVESSPTTGSLRKLQQTVHGSMTSAASATFAVTTACFNTNTVDDRKSSFFEFKPLNRLNMVPADFNNHVIKQSAQAEGIGKAQSFASSPLVESEIAVPTNELSLSSPIQMVSSSPSAPVDVDMDDINHKGNTSTGLQASHVEVRGNGLSVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSCRYSTGTIMSVQGERSDKASSLAGLDDKVSAMYSQLSHAAEPNSTSEPSPIATNDDGLEGVGFVSNRISDNADDDDPFSKRRKMELGNVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMAVAAAGQTRIKLEESDTISLDLGMGISSAAEHRSNAQGKTMHSEFGNTQTHTSNSNFKFVHTTPAPVYFGVLNNSSNPYGSRDNRSDGPALNHASYPCPQSMGRILMGP* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01229 587 SMART WRKY_cls 233 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu8g01229 587 SMART WRKY_cls 409 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu8g01229 587 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 152 522 IPR044810 GO:0003700
Lapu8g01229 587 Pfam WRKY DNA -binding domain 234 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu8g01229 587 Pfam WRKY DNA -binding domain 410 466 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu8g01229 587 FunFam WRKY transcription factor 33 396 462 - -
Lapu8g01229 587 MobiDBLite consensus disorder prediction 1 38 - -
Lapu8g01229 587 Gene3D WRKY domain 225 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu8g01229 587 Gene3D WRKY domain 394 470 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu8g01229 587 ProSiteProfiles WRKY domain profile. 404 469 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu8g01229 587 MobiDBLite consensus disorder prediction 556 587 - -
Lapu8g01229 587 SUPERFAMILY WRKY DNA-binding domain 230 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu8g01229 587 FunFam WRKY transcription factor 223 293 - -
Lapu8g01229 587 SUPERFAMILY WRKY DNA-binding domain 401 469 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu8g01229 587 ProSiteProfiles WRKY domain profile. 228 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01229 Lapu-Chr8 29915461 29921372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01229 43 587 WRKY Transcription Factor Family AT4G26640 55.435 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu8g01229 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01229 - - gmx:100816583 1041.18