Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01210 ATGATTCTCCCCTCGGATACACACTACATGGCCAACAATGATGTAGAGGAGCCTTTGCTTTCAGGATCACTGGATGAGACTCAAAAGGCTAAACGGCAGTTGAACAAGAGAAGGTTACACCGTTCTAGAAGTGCTCCTCACACAGATCTTGTTCCTTCTGATATACAAAGCAAAGAATCAACTCCTCGAACCACATCCATATTTCAGGATCTACATCCAAGTTTTAAAAGAGTGATTATCTACCTTGCAGTATATTTAGGTGTAGGTGCTTTAATCTTCTTCCTTGTCAGGGACCAGATTAAGGGGATGAAAACAGATGGAATTCTTGATGCTTTATACTTTACAATTGTTACAATGACCACTGTTGGATATGGAGATCTTGTGCCAAATAGCCACCTTACAAAACTACTTGCATGTGCCTTTGTTTTCTCTGGGATGGCATTGATCGGACTGACTGTAAGCAAAGCAGCAGACTACTTAGTTGAGAAACAGGAACTTTTGCTCGTTAAAGCTATGCACATGCACCAAAAAGTTGGTTCAACTGGGATTTTAAGGGAGATTGAGACCAATAAAACAAGATACAAACTTTTTGTAGTCTTTTTCCTCCTTTTGATTCTCATCATTGCGGGGACAATTTTTTTGGTCACTGTTGAGAAATTGGATGTTATTGATGCATTCTATTGTGTTTGTTCTACAATTACAACCCTTGGTTATGGGGACCAAAGTTTCTCAACTCAAGCAGGAAGAATATTTGCCGTGTTTTGGATATTAACAGGTACTATTACTTTAGCTCAGTTTTTCCTCTACATTGCTGAGCTAAACACTGAAATCAGACAAAAGGAACTTGTCAAGTGGGTGCTTACAAGGAAAGTTACCAATTTAGATTTGGAGGCTGCAGATCTTGATGAGGATGGGACTGTCGGGGCTGCTGAATTTGTTATTTATAAGCTCAAAGAGATGGGGAAGATTAGTCAAGAAGATATATCACTTGTGATGCAGGAGTTTGAACAGCTTGATGTTGATGATTCTGGTACACTGTCAATTTCGGATATAACACTTGCTCAGTCATCATAG 1074 0.3939 MILPSDTHYMANNDVEEPLLSGSLDETQKAKRQLNKRRLHRSRSAPHTDLVPSDIQSKESTPRTTSIFQDLHPSFKRVIIYLAVYLGVGALIFFLVRDQIKGMKTDGILDALYFTIVTMTTVGYGDLVPNSHLTKLLACAFVFSGMALIGLTVSKAADYLVEKQELLLVKAMHMHQKVGSTGILREIETNKTRYKLFVVFFLLLILIIAGTIFLVTVEKLDVIDAFYCVCSTITTLGYGDQSFSTQAGRIFAVFWILTGTITLAQFFLYIAELNTEIRQKELVKWVLTRKVTNLDLEAADLDEDGTVGAAEFVIYKLKEMGKISQEDISLVMQEFEQLDVDDSGTLSISDITLAQSS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01210 357 ProSitePatterns EF-hand calcium-binding domain. 300 312 IPR018247 -
Lapu8g01210 357 Gene3D - 72 166 - -
Lapu8g01210 357 FunFam Calcium-activated outward-rectifying potassium channel 1 72 167 - -
Lapu8g01210 357 SUPERFAMILY Voltage-gated potassium channels 63 175 - -
Lapu8g01210 357 ProSitePatterns EF-hand calcium-binding domain. 339 351 IPR018247 -
Lapu8g01210 357 PRINTS Two pore domain K+ channel signature 231 259 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lapu8g01210 357 PRINTS Two pore domain K+ channel signature 305 314 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lapu8g01210 357 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 77 330 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lapu8g01210 357 Pfam Ion channel 81 161 IPR013099 -
Lapu8g01210 357 Pfam Ion channel 202 274 IPR013099 -
Lapu8g01210 357 SUPERFAMILY Voltage-gated potassium channels 188 293 - -
Lapu8g01210 357 FunFam Two-pore potassium channel 1 176 284 - -
Lapu8g01210 357 MobiDBLite consensus disorder prediction 34 62 - -
Lapu8g01210 357 Gene3D - 177 287 - -
Lapu8g01210 357 SUPERFAMILY EF-hand 259 353 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01210 Lapu-Chr8 29792143 29795290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01210 54 357 Ion Channels AT5G55630 66.667 9.76e-154 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01210 K05389 - gmx:100777388 578.941