Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01205 ATGGCTGACTCGGACAACGACTCGGGGGGAGCGCAGAACGCGGGGAACAGCAGCTTCAGCGAGTTGTCGCCTCGGGAACAGGACCGCTTCCTTCCAATCGCCAACGTAAGCAGGATCATGAAAAAGGCTCTGCCGGCCAACGCCAAGATCTCCAAGGACGCCAAAGAGACCGTGCAGGAATGCGTGTCGGAGTTCATAAGTTTCATAACCGGTGAAGCTTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACAATCAACGGCGATGACCTTCTGTGGGCCATGACCACCCTGGGATTCGAGGAGTACGTGGAGCCGCTCAAAATTTACCTCCAGCGCTTCCGCGAGATCGAGGGAGAGAAGACCGTGGCCGCGCGCGACAAGGACGCCGCCGCCTCCGCCGTCAGCGGCTACGACTACTCTCCGTCCTCGGCGGCCGCCATGATGCATCATCAGGGACACGTCTACGGCTCCCCCGCGTTCCATCAAGTGAGTGCCGCTCCTGTTATGGGTAAGCCTGGACCTGGACCTGGACCTGGGCCTGGGCCTGGGCCAACTTATCCTGCCCCTGGTAGACCCAGATAG 582 0.6082 MADSDNDSGGAQNAGNSSFSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQRFREIEGEKTVAARDKDAAASAVSGYDYSPSSAAAMMHHQGHVYGSPAFHQVSAAPVMGKPGPGPGPGPGPGPTYPAPGRPR* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01205 193 MobiDBLite consensus disorder prediction 1 26 - -
Lapu8g01205 193 MobiDBLite consensus disorder prediction 165 193 - -
Lapu8g01205 193 MobiDBLite consensus disorder prediction 171 193 - -
Lapu8g01205 193 FunFam Nuclear transcription factor Y subunit B-3 19 142 - -
Lapu8g01205 193 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lapu8g01205 193 SUPERFAMILY Histone-fold 27 130 IPR009072 GO:0046982
Lapu8g01205 193 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Lapu8g01205 193 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Lapu8g01205 193 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Lapu8g01205 193 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lapu8g01205 193 Gene3D Histone, subunit A 19 149 IPR009072 GO:0046982
Lapu8g01205 193 MobiDBLite consensus disorder prediction 1 24 - -
Lapu8g01205 193 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01205 Lapu-Chr8 29771542 29775837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01205 1 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.484 4.69e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu8g01205 CBFD_NFYB_HMF 1.8e-27 CL0012