Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01182 ATGGGAACCAAGTCAGCTGTGGATTTAATGGAGTCTTCATCTGAGGTTCACTTTTCTGGAGTTTACATGGATGGAATAGGGCAAAGAAACGCTGGCACAGAGCAACCAACTACTTCTGCCACTGACATGAATAAACAACCTTTTGTGATAGGTGTTGCTGGTGGAGCAGCATCCGGTAAGACATCAGTTTGTGATATGATTATTCAGCAGCTTCATGACCAACGAGTTGTACTTGTTAATCAGGATTCATTTTACCATAATTTGACCGAGGAGGAACTTATAAGAGTACAAGATTACAACTTTGACCATCCTGAAGCTTTTGATACTGAGCATTTACTACGTGTCATGGACAAGTTGAAGCGAGGCCAAGCTGTAGATATTCCGAAGTATGACTTTAAGGGTTACAAAAGTGGTGTTTTTCCGGCAAGACGGGTAAACCTGGCGGATGTTATTATTTTGGAAGGTATCCTTGTTTTCCATGATCCACGAGTTCGGGCATTGATGAATATGAAGATATTTGTCGACACAGATGCTGATATTCGTTTGGCTAGAAGAATTAAGCGTGATACTGCTGACAATGCTCGTGATATTGGAGCTGTGCTCGATCAGTATTCTAAATTTGTGAAGCCGGCTTTTGATGACTTTATTCTCCCCACCAAGAAGTATGCTGATATCATTATACCCCGTGGAGGAGATAATCATGTAGCTATTGATTTGATTGTACAGCATATTCGCACGAAGCTTGGGCAGCATGACTTGTGTAAAATATACCCTAATTTATATGTCATTCAGTCTACTTTTCAGATACGGGGTATGCATACCCTGATTCGTGATTCTCAAACGACGAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTGGTTGTAGAACATGGACTAGGGCATCTTCCATTTACAGAAAAGCAAGTTATCACTCCTACTGGATCGGTTTATAGTGGCGTGGATTTCTGTAAGAGGTTGTGTGGTGTCTCCATCATCCGGAGTGGCGAGAGTATGGAAAATGCTTTACGAGCATGCTGTAAAGGCATCAAGATTGGGAAAATTCTTATTCACAGAGAAGGTGACAATGGTCAACAGCTAATATATGAGAAGTTGCCTAAGGATATCTCTGATAGACATGTGTTGTTGTTGGATCCTATCTTGGGCACAGGTAATTCGGCTGTTCAAGCAATTTCTTTACTTTTAAAGAAGGGTGTACCAGAGGCCAACATCATATTTCTCAATCTCATATCAGCACCTCAAGGTGTTCATGTGGTCTGCAAAAGCTTCCCGAGAATAAAGATCGTGACATCTGATATTGACATTGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGTGAGTTTGGGGATCGGTATTTTGGAACAGATGATGATCAGCAGGTGGTGCTCCCTTCACAGTAG 1434 0.4142 MGTKSAVDLMESSSEVHFSGVYMDGIGQRNAGTEQPTTSATDMNKQPFVIGVAGGAASGKTSVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELIRVQDYNFDHPEAFDTEHLLRVMDKLKRGQAVDIPKYDFKGYKSGVFPARRVNLADVIILEGILVFHDPRVRALMNMKIFVDTDADIRLARRIKRDTADNARDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPKDISDRHVLLLDPILGTGNSAVQAISLLLKKGVPEANIIFLNLISAPQGVHVVCKSFPRIKIVTSDIDIGLNEDFRVIPGMGEFGDRYFGTDDDQQVVLPSQ* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01182 477 Gene3D - 251 466 IPR029057 -
Lapu8g01182 477 PRINTS Uridine kinase signature 77 88 - -
Lapu8g01182 477 PRINTS Uridine kinase signature 193 204 - -
Lapu8g01182 477 PRINTS Uridine kinase signature 122 137 - -
Lapu8g01182 477 PRINTS Uridine kinase signature 179 189 - -
Lapu8g01182 477 PRINTS Uridine kinase signature 47 64 - -
Lapu8g01182 477 PRINTS Uridine kinase signature 215 228 - -
Lapu8g01182 477 NCBIfam uridine kinase 45 247 IPR000764 -
Lapu8g01182 477 Pfam Phosphoribulokinase / Uridine kinase family 49 235 IPR006083 GO:0005524|GO:0016301
Lapu8g01182 477 Gene3D - 43 250 IPR027417 -
Lapu8g01182 477 CDD UMPK 49 247 IPR000764 -
Lapu8g01182 477 CDD PRTases_typeI 324 442 IPR000836 -
Lapu8g01182 477 SUPERFAMILY PRTase-like 250 467 IPR029057 -
Lapu8g01182 477 PANTHER URIDINE KINASE 44 377 - -
Lapu8g01182 477 Pfam Uracil phosphoribosyltransferase 265 466 - -
Lapu8g01182 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 240 IPR027417 -
Lapu8g01182 477 FunFam Uridine kinase 44 250 - -
Lapu8g01182 477 FunFam Uridine kinase 251 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01182 Lapu-Chr8 29589243 29597509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01182 1 469 PRT Gene Family AT4G26510 84.289 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01182 K00876 - gmx:100798205 895.96